Antimicrobial Resistance in Salmonella enterica Serovar Paratyphi B Variant Java in Poultry from Europe and Latin America
Salmonella enterica serovar Paratyphi B variant Java sequence type 28 is prevalent in poultry and poultry meat. We investigated the evolutionary relatedness between sequence type 28 strains from Europe and Latin America using time-resolved phylogeny and principal component analysis. We sequenced iso...
| Main Authors: | , , , , , , , , , , , |
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| Format: | Article |
| Language: | English |
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Centers for Disease Control and Prevention
2020-06-01
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| Series: | Emerging Infectious Diseases |
| Subjects: | |
| Online Access: | https://wwwnc.cdc.gov/eid/article/26/6/19-1121_article |
| _version_ | 1818096954636238848 |
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| author | L. Ricardo Castellanos Linda van der Graaf-van Bloois Pilar Donado-Godoy Kees Veldman Francisco Duarte María T. Acuña Claudia Jarquín François-Xavier Weill Dik J. Mevius Jaap A. Wagenaar Joost Hordijk Aldert L. Zomer |
| author_facet | L. Ricardo Castellanos Linda van der Graaf-van Bloois Pilar Donado-Godoy Kees Veldman Francisco Duarte María T. Acuña Claudia Jarquín François-Xavier Weill Dik J. Mevius Jaap A. Wagenaar Joost Hordijk Aldert L. Zomer |
| author_sort | L. Ricardo Castellanos |
| collection | DOAJ |
| description | Salmonella enterica serovar Paratyphi B variant Java sequence type 28 is prevalent in poultry and poultry meat. We investigated the evolutionary relatedness between sequence type 28 strains from Europe and Latin America using time-resolved phylogeny and principal component analysis. We sequenced isolates from Colombia, Guatemala, Costa Rica, and the Netherlands and complemented them with publicly available genomes from Europe, Africa, and the Middle East. Phylogenetic time trees and effective population sizes (Ne) showed separate clustering of strains from Latin America and Europe. The separation is estimated to have occurred during the 1980s. Ne of strains increased sharply in Europe around 1995 and in Latin America around 2005. Principal component analysis on noncore genes showed a clear distinction between strains from Europe and Latin America, whereas the plasmid gene content was similar. Regardless of the evolutionary separation, similar features of resistance to β-lactams and quinolones/fluoroquinolones indicated parallel evolution of antimicrobial resistance in both regions. |
| first_indexed | 2024-12-10T23:12:50Z |
| format | Article |
| id | doaj.art-9d2b6d81ca5345bea55a7316855070a3 |
| institution | Directory Open Access Journal |
| issn | 1080-6040 1080-6059 |
| language | English |
| last_indexed | 2024-12-10T23:12:50Z |
| publishDate | 2020-06-01 |
| publisher | Centers for Disease Control and Prevention |
| record_format | Article |
| series | Emerging Infectious Diseases |
| spelling | doaj.art-9d2b6d81ca5345bea55a7316855070a32022-12-22T01:29:54ZengCenters for Disease Control and PreventionEmerging Infectious Diseases1080-60401080-60592020-06-012661164117310.3201/eid2606.191121Antimicrobial Resistance in Salmonella enterica Serovar Paratyphi B Variant Java in Poultry from Europe and Latin AmericaL. Ricardo CastellanosLinda van der Graaf-van BlooisPilar Donado-GodoyKees VeldmanFrancisco DuarteMaría T. AcuñaClaudia JarquínFrançois-Xavier WeillDik J. MeviusJaap A. WagenaarJoost HordijkAldert L. ZomerSalmonella enterica serovar Paratyphi B variant Java sequence type 28 is prevalent in poultry and poultry meat. We investigated the evolutionary relatedness between sequence type 28 strains from Europe and Latin America using time-resolved phylogeny and principal component analysis. We sequenced isolates from Colombia, Guatemala, Costa Rica, and the Netherlands and complemented them with publicly available genomes from Europe, Africa, and the Middle East. Phylogenetic time trees and effective population sizes (Ne) showed separate clustering of strains from Latin America and Europe. The separation is estimated to have occurred during the 1980s. Ne of strains increased sharply in Europe around 1995 and in Latin America around 2005. Principal component analysis on noncore genes showed a clear distinction between strains from Europe and Latin America, whereas the plasmid gene content was similar. Regardless of the evolutionary separation, similar features of resistance to β-lactams and quinolones/fluoroquinolones indicated parallel evolution of antimicrobial resistance in both regions.https://wwwnc.cdc.gov/eid/article/26/6/19-1121_articleBroilerwhole-genome sequencingmolecular clockBayesian skylinepAmpCCMY-2 |
| spellingShingle | L. Ricardo Castellanos Linda van der Graaf-van Bloois Pilar Donado-Godoy Kees Veldman Francisco Duarte María T. Acuña Claudia Jarquín François-Xavier Weill Dik J. Mevius Jaap A. Wagenaar Joost Hordijk Aldert L. Zomer Antimicrobial Resistance in Salmonella enterica Serovar Paratyphi B Variant Java in Poultry from Europe and Latin America Emerging Infectious Diseases Broiler whole-genome sequencing molecular clock Bayesian skyline pAmpC CMY-2 |
| title | Antimicrobial Resistance in Salmonella enterica Serovar Paratyphi B Variant Java in Poultry from Europe and Latin America |
| title_full | Antimicrobial Resistance in Salmonella enterica Serovar Paratyphi B Variant Java in Poultry from Europe and Latin America |
| title_fullStr | Antimicrobial Resistance in Salmonella enterica Serovar Paratyphi B Variant Java in Poultry from Europe and Latin America |
| title_full_unstemmed | Antimicrobial Resistance in Salmonella enterica Serovar Paratyphi B Variant Java in Poultry from Europe and Latin America |
| title_short | Antimicrobial Resistance in Salmonella enterica Serovar Paratyphi B Variant Java in Poultry from Europe and Latin America |
| title_sort | antimicrobial resistance in salmonella enterica serovar paratyphi b variant java in poultry from europe and latin america |
| topic | Broiler whole-genome sequencing molecular clock Bayesian skyline pAmpC CMY-2 |
| url | https://wwwnc.cdc.gov/eid/article/26/6/19-1121_article |
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