Two plastomes of Phyllostachys and reconstruction of phylogenic relationship amongst selected Phyllostachys species using genome skimming
The genus Phyllostachys is economically important; however, only a small amount of complete plastid genomes have been reported to date. Here, we characterized two complete chloroplast genomes of Phyllostachys using genome skimming. The chloroplast genomes of Phyllostachys reticulata and Phyllostachy...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1696244 |
| _version_ | 1827773138376589312 |
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| author | Nian-Jun Huang Jiang-Ping Li Guang-Yao Yang Fen Yu |
| author_facet | Nian-Jun Huang Jiang-Ping Li Guang-Yao Yang Fen Yu |
| author_sort | Nian-Jun Huang |
| collection | DOAJ |
| description | The genus Phyllostachys is economically important; however, only a small amount of complete plastid genomes have been reported to date. Here, we characterized two complete chloroplast genomes of Phyllostachys using genome skimming. The chloroplast genomes of Phyllostachys reticulata and Phyllostachys edulis ‘Pachyloen’ were 136,689 bp and 139,678 bp in length, respectively, and their GC contents were 38.8% and 38.9%, respectively. The sequences of each species contained 132 unique genes, including 39 tRNA, eight rRNA, and 85 protein-coding genes. Phylogenetic analysis shows that all selected Phyllostachys species were grouped into one well-supported clade in the Phyllostachys clade (V) of Arundinarieae. Moreover, in terms of chloroplast genome size, structure, and composition, P. edulis ‘Pachyloen’ is identical to P. edulis, further indicating the affinity between them. |
| first_indexed | 2024-03-11T13:18:47Z |
| format | Article |
| id | doaj.art-9d51bbfff487476e95252abf4a329dc0 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:18:47Z |
| publishDate | 2020-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-9d51bbfff487476e95252abf4a329dc02023-11-03T10:38:53ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-01-0151697010.1080/23802359.2019.16962441696244Two plastomes of Phyllostachys and reconstruction of phylogenic relationship amongst selected Phyllostachys species using genome skimmingNian-Jun Huang0Jiang-Ping Li1Guang-Yao Yang2Fen Yu3Jiangxi Provincial Key Laboratory for Bamboo Germplasm Resources and Utilization, Forestry College, Jiangxi Agricultural UniversityJiangxi Provincial Key Laboratory for Bamboo Germplasm Resources and Utilization, Forestry College, Jiangxi Agricultural UniversityJiangxi Provincial Key Laboratory for Bamboo Germplasm Resources and Utilization, Forestry College, Jiangxi Agricultural UniversityJiangxi Provincial Key Laboratory for Bamboo Germplasm Resources and Utilization, Forestry College, Jiangxi Agricultural UniversityThe genus Phyllostachys is economically important; however, only a small amount of complete plastid genomes have been reported to date. Here, we characterized two complete chloroplast genomes of Phyllostachys using genome skimming. The chloroplast genomes of Phyllostachys reticulata and Phyllostachys edulis ‘Pachyloen’ were 136,689 bp and 139,678 bp in length, respectively, and their GC contents were 38.8% and 38.9%, respectively. The sequences of each species contained 132 unique genes, including 39 tRNA, eight rRNA, and 85 protein-coding genes. Phylogenetic analysis shows that all selected Phyllostachys species were grouped into one well-supported clade in the Phyllostachys clade (V) of Arundinarieae. Moreover, in terms of chloroplast genome size, structure, and composition, P. edulis ‘Pachyloen’ is identical to P. edulis, further indicating the affinity between them.http://dx.doi.org/10.1080/23802359.2019.1696244bambusoideaearundinarieaephyllostachys reticulataphyllostachys edulisgenome skimming |
| spellingShingle | Nian-Jun Huang Jiang-Ping Li Guang-Yao Yang Fen Yu Two plastomes of Phyllostachys and reconstruction of phylogenic relationship amongst selected Phyllostachys species using genome skimming Mitochondrial DNA. Part B. Resources bambusoideae arundinarieae phyllostachys reticulata phyllostachys edulis genome skimming |
| title | Two plastomes of Phyllostachys and reconstruction of phylogenic relationship amongst selected Phyllostachys species using genome skimming |
| title_full | Two plastomes of Phyllostachys and reconstruction of phylogenic relationship amongst selected Phyllostachys species using genome skimming |
| title_fullStr | Two plastomes of Phyllostachys and reconstruction of phylogenic relationship amongst selected Phyllostachys species using genome skimming |
| title_full_unstemmed | Two plastomes of Phyllostachys and reconstruction of phylogenic relationship amongst selected Phyllostachys species using genome skimming |
| title_short | Two plastomes of Phyllostachys and reconstruction of phylogenic relationship amongst selected Phyllostachys species using genome skimming |
| title_sort | two plastomes of phyllostachys and reconstruction of phylogenic relationship amongst selected phyllostachys species using genome skimming |
| topic | bambusoideae arundinarieae phyllostachys reticulata phyllostachys edulis genome skimming |
| url | http://dx.doi.org/10.1080/23802359.2019.1696244 |
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