Complete chloroplast genome of Prunus fasciculata (Rosaceae), a species native to western North America
Prunus fasciculata is a wild species of Prunus native to western North America. Here, we reported the complete chloroplast (cp) genome of P. fasciculata (GenBank accession number: MW160273). The cp genome was 157,986 bp long, with a large single-copy (LSC) region of 86,068 bp and a small single-copy...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-02-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1872439 |
| _version_ | 1797639020666159104 |
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| author | Yue-Ling Li James Reed Yu-Qian Xu Da-Hao Qu Zhong-Shuai Sun |
| author_facet | Yue-Ling Li James Reed Yu-Qian Xu Da-Hao Qu Zhong-Shuai Sun |
| author_sort | Yue-Ling Li |
| collection | DOAJ |
| description | Prunus fasciculata is a wild species of Prunus native to western North America. Here, we reported the complete chloroplast (cp) genome of P. fasciculata (GenBank accession number: MW160273). The cp genome was 157,986 bp long, with a large single-copy (LSC) region of 86,068 bp and a small single-copy (SSC) region of 19,166 bp separated by a pair of inverted repeats (IRs) of 26,376 bp. It encodes 129 genes, including 84 protein-coding genes, 37 tRNA genes, and eight ribosomal RNA genes. We also reconstructed the phylogeny of Prunus sensu lato using maximum-likelihood (ML) method, including our data and previously reported cp genomes of related taxa. The phylogenetic analysis confirmed the sister group relationship between P. fasciculata and the remaining subg. Prunus. |
| first_indexed | 2024-03-11T13:10:47Z |
| format | Article |
| id | doaj.art-9d6faf7282ec417bbdc6ec402a413aab |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:10:47Z |
| publishDate | 2021-02-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-9d6faf7282ec417bbdc6ec402a413aab2023-11-03T14:08:19ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-02-016248048210.1080/23802359.2021.18724391872439Complete chloroplast genome of Prunus fasciculata (Rosaceae), a species native to western North AmericaYue-Ling Li0James Reed1Yu-Qian Xu2Da-Hao Qu3Zhong-Shuai Sun4Zhejiang Provincial Key Laboratory of Plant Evolutionary Ecology and Conservation, Taizhou UniversityCalifornia Botanic GardenCollege of Life Sciences, Taizhou UniversityCollege of Life Sciences, Taizhou UniversityZhejiang Provincial Key Laboratory of Plant Evolutionary Ecology and Conservation, Taizhou UniversityPrunus fasciculata is a wild species of Prunus native to western North America. Here, we reported the complete chloroplast (cp) genome of P. fasciculata (GenBank accession number: MW160273). The cp genome was 157,986 bp long, with a large single-copy (LSC) region of 86,068 bp and a small single-copy (SSC) region of 19,166 bp separated by a pair of inverted repeats (IRs) of 26,376 bp. It encodes 129 genes, including 84 protein-coding genes, 37 tRNA genes, and eight ribosomal RNA genes. We also reconstructed the phylogeny of Prunus sensu lato using maximum-likelihood (ML) method, including our data and previously reported cp genomes of related taxa. The phylogenetic analysis confirmed the sister group relationship between P. fasciculata and the remaining subg. Prunus.http://dx.doi.org/10.1080/23802359.2021.1872439prunus fasciculataprunus sensu latochloroplast genomephylogenomics |
| spellingShingle | Yue-Ling Li James Reed Yu-Qian Xu Da-Hao Qu Zhong-Shuai Sun Complete chloroplast genome of Prunus fasciculata (Rosaceae), a species native to western North America Mitochondrial DNA. Part B. Resources prunus fasciculata prunus sensu lato chloroplast genome phylogenomics |
| title | Complete chloroplast genome of Prunus fasciculata (Rosaceae), a species native to western North America |
| title_full | Complete chloroplast genome of Prunus fasciculata (Rosaceae), a species native to western North America |
| title_fullStr | Complete chloroplast genome of Prunus fasciculata (Rosaceae), a species native to western North America |
| title_full_unstemmed | Complete chloroplast genome of Prunus fasciculata (Rosaceae), a species native to western North America |
| title_short | Complete chloroplast genome of Prunus fasciculata (Rosaceae), a species native to western North America |
| title_sort | complete chloroplast genome of prunus fasciculata rosaceae a species native to western north america |
| topic | prunus fasciculata prunus sensu lato chloroplast genome phylogenomics |
| url | http://dx.doi.org/10.1080/23802359.2021.1872439 |
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