Characterization of the complete chloroplast genome of Korean endemic, Habenaria cruciformis (Orchidaceae)
Habenaria cruciformis (Orchidaceae), endemic to South Korea, is a perennial herb and its local population sizes are declined because of the destruction caused by human activity and the invasion of exotic species in their habitats. Here, we report the complete chloroplast (cp) genome sequence of H. c...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1812448 |
| _version_ | 1797639088356982784 |
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| author | Changkyun Kim Hoang Dang Khoa Do Joonhyung Jung Dong-Kap Kim Joo-Hwan Kim |
| author_facet | Changkyun Kim Hoang Dang Khoa Do Joonhyung Jung Dong-Kap Kim Joo-Hwan Kim |
| author_sort | Changkyun Kim |
| collection | DOAJ |
| description | Habenaria cruciformis (Orchidaceae), endemic to South Korea, is a perennial herb and its local population sizes are declined because of the destruction caused by human activity and the invasion of exotic species in their habitats. Here, we report the complete chloroplast (cp) genome sequence of H. cruciformis, which will provide valuable information for its biological conservation and future studies for the cp genome evolution of endemic plants on the Korean Peninsula. The cp genome of H. cruciformis is 155,708 bp in length, containing a large single-copy region of 85,131 bp and a small single-copy region of 17,659 bp which are separated by a pair of inverted repeats of 26,459 bp. The H. cruciformis cp genome encodes 131 genes, of which 113 are unique, including 79 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. The overall GC content is 36.6%, which is consistent with the Habenaria species previously reported. Our phylogenomic analyses identified the sister relationship between H. cruciformis and H. linearfolia in the genus. |
| first_indexed | 2024-03-11T13:12:52Z |
| format | Article |
| id | doaj.art-9dce05bd35c6447297ddf307c5d425fe |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:12:52Z |
| publishDate | 2020-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-9dce05bd35c6447297ddf307c5d425fe2023-11-03T14:00:33ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-07-01533269327110.1080/23802359.2020.18124481812448Characterization of the complete chloroplast genome of Korean endemic, Habenaria cruciformis (Orchidaceae)Changkyun Kim0Hoang Dang Khoa Do1Joonhyung Jung2Dong-Kap Kim3Joo-Hwan Kim4Department of Life Science, Gachon UniversityDepartment of Life Science, Gachon UniversityDepartment of Life Science, Gachon UniversityForest Biodiversity Division, Korea National ArboretumDepartment of Life Science, Gachon UniversityHabenaria cruciformis (Orchidaceae), endemic to South Korea, is a perennial herb and its local population sizes are declined because of the destruction caused by human activity and the invasion of exotic species in their habitats. Here, we report the complete chloroplast (cp) genome sequence of H. cruciformis, which will provide valuable information for its biological conservation and future studies for the cp genome evolution of endemic plants on the Korean Peninsula. The cp genome of H. cruciformis is 155,708 bp in length, containing a large single-copy region of 85,131 bp and a small single-copy region of 17,659 bp which are separated by a pair of inverted repeats of 26,459 bp. The H. cruciformis cp genome encodes 131 genes, of which 113 are unique, including 79 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. The overall GC content is 36.6%, which is consistent with the Habenaria species previously reported. Our phylogenomic analyses identified the sister relationship between H. cruciformis and H. linearfolia in the genus.http://dx.doi.org/10.1080/23802359.2020.1812448chloroplast genomeendemichabaneria cruciformisorchidaceaephylogenomic analyses |
| spellingShingle | Changkyun Kim Hoang Dang Khoa Do Joonhyung Jung Dong-Kap Kim Joo-Hwan Kim Characterization of the complete chloroplast genome of Korean endemic, Habenaria cruciformis (Orchidaceae) Mitochondrial DNA. Part B. Resources chloroplast genome endemic habaneria cruciformis orchidaceae phylogenomic analyses |
| title | Characterization of the complete chloroplast genome of Korean endemic, Habenaria cruciformis (Orchidaceae) |
| title_full | Characterization of the complete chloroplast genome of Korean endemic, Habenaria cruciformis (Orchidaceae) |
| title_fullStr | Characterization of the complete chloroplast genome of Korean endemic, Habenaria cruciformis (Orchidaceae) |
| title_full_unstemmed | Characterization of the complete chloroplast genome of Korean endemic, Habenaria cruciformis (Orchidaceae) |
| title_short | Characterization of the complete chloroplast genome of Korean endemic, Habenaria cruciformis (Orchidaceae) |
| title_sort | characterization of the complete chloroplast genome of korean endemic habenaria cruciformis orchidaceae |
| topic | chloroplast genome endemic habaneria cruciformis orchidaceae phylogenomic analyses |
| url | http://dx.doi.org/10.1080/23802359.2020.1812448 |
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