The complete chloroplast genome of Spartina alterniflora
Spartina alterniflora (also named as Sporobolus alterniflorus) grows in coastal salt marshes area, which has important economic value in coastal natural wetlands. In the process of this research, the whole chloroplast genome sequence of Spartina alterniflora was recovered by Illumina sequencing. The...
| Main Authors: | , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2020-07-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1776173 |
| _version_ | 1797639165266886656 |
|---|---|
| author | Yang Zhao Kai Wang Yingying He Yanfeng Wang Changfeng Qu Jinlai Miao |
| author_facet | Yang Zhao Kai Wang Yingying He Yanfeng Wang Changfeng Qu Jinlai Miao |
| author_sort | Yang Zhao |
| collection | DOAJ |
| description | Spartina alterniflora (also named as Sporobolus alterniflorus) grows in coastal salt marshes area, which has important economic value in coastal natural wetlands. In the process of this research, the whole chloroplast genome sequence of Spartina alterniflora was recovered by Illumina sequencing. The complete genome was 135,560 bp in length with 38.45% GC content which was a circular genome containing a large single-copy region (LSC, 80,828 bp), a small single-copy region (SSC, 12,714 bp) and a pair of inverted repeat regions (IRs, 42,018 bp). Totally, it encodes 130 genes, including 84 protein-coding genes, 38 tRNAs, and 8 rRNAs. Phylogenetic analysis indicated that Spartina alterniflora was closely related to Sporobolus maritimus. |
| first_indexed | 2024-03-11T13:13:54Z |
| format | Article |
| id | doaj.art-9e53c124868a45108206df44d858ef73 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:13:54Z |
| publishDate | 2020-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-9e53c124868a45108206df44d858ef732023-11-03T14:00:29ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-07-01532440244110.1080/23802359.2020.17761731776173The complete chloroplast genome of Spartina alternifloraYang Zhao0Kai Wang1Yingying He2Yanfeng Wang3Changfeng Qu4Jinlai Miao5First Institute of Oceanography, Ministry of Natural ResourceFirst Institute of Oceanography, Ministry of Natural ResourceFirst Institute of Oceanography, Ministry of Natural ResourceCollege of Marine Science and Biological Engineering, Qingdao University of Science and TechnologyFirst Institute of Oceanography, Ministry of Natural ResourceFirst Institute of Oceanography, Ministry of Natural ResourceSpartina alterniflora (also named as Sporobolus alterniflorus) grows in coastal salt marshes area, which has important economic value in coastal natural wetlands. In the process of this research, the whole chloroplast genome sequence of Spartina alterniflora was recovered by Illumina sequencing. The complete genome was 135,560 bp in length with 38.45% GC content which was a circular genome containing a large single-copy region (LSC, 80,828 bp), a small single-copy region (SSC, 12,714 bp) and a pair of inverted repeat regions (IRs, 42,018 bp). Totally, it encodes 130 genes, including 84 protein-coding genes, 38 tRNAs, and 8 rRNAs. Phylogenetic analysis indicated that Spartina alterniflora was closely related to Sporobolus maritimus.http://dx.doi.org/10.1080/23802359.2020.1776173spartina alterniflorachloroplast genomephylogenetic analysis |
| spellingShingle | Yang Zhao Kai Wang Yingying He Yanfeng Wang Changfeng Qu Jinlai Miao The complete chloroplast genome of Spartina alterniflora Mitochondrial DNA. Part B. Resources spartina alterniflora chloroplast genome phylogenetic analysis |
| title | The complete chloroplast genome of Spartina alterniflora |
| title_full | The complete chloroplast genome of Spartina alterniflora |
| title_fullStr | The complete chloroplast genome of Spartina alterniflora |
| title_full_unstemmed | The complete chloroplast genome of Spartina alterniflora |
| title_short | The complete chloroplast genome of Spartina alterniflora |
| title_sort | complete chloroplast genome of spartina alterniflora |
| topic | spartina alterniflora chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2020.1776173 |
| work_keys_str_mv | AT yangzhao thecompletechloroplastgenomeofspartinaalterniflora AT kaiwang thecompletechloroplastgenomeofspartinaalterniflora AT yingyinghe thecompletechloroplastgenomeofspartinaalterniflora AT yanfengwang thecompletechloroplastgenomeofspartinaalterniflora AT changfengqu thecompletechloroplastgenomeofspartinaalterniflora AT jinlaimiao thecompletechloroplastgenomeofspartinaalterniflora AT yangzhao completechloroplastgenomeofspartinaalterniflora AT kaiwang completechloroplastgenomeofspartinaalterniflora AT yingyinghe completechloroplastgenomeofspartinaalterniflora AT yanfengwang completechloroplastgenomeofspartinaalterniflora AT changfengqu completechloroplastgenomeofspartinaalterniflora AT jinlaimiao completechloroplastgenomeofspartinaalterniflora |