The complete chloroplast genome of Alsophila latebrosa, a common and widespread tree fern (Cyatheaceae)
Alsophila latebrosa is a common and widespread tree fern of Cyatheaceae. Its complete chloroplast genome is first assembled and reported with 155,724 bp in length, including a large single copy (LSC) region of 85,800 bp, a small single copy (SSC) region of 21,620 bp, and a pair of inverted repeats (...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1942262 |
| _version_ | 1797638816356368384 |
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| author | Zhen Wang Ruonan Wang Limin Lin Ruisi Liu Sirui Ma Yongfeng Hong Ziqing He Yingjuan Su Ting Wang |
| author_facet | Zhen Wang Ruonan Wang Limin Lin Ruisi Liu Sirui Ma Yongfeng Hong Ziqing He Yingjuan Su Ting Wang |
| author_sort | Zhen Wang |
| collection | DOAJ |
| description | Alsophila latebrosa is a common and widespread tree fern of Cyatheaceae. Its complete chloroplast genome is first assembled and reported with 155,724 bp in length, including a large single copy (LSC) region of 85,800 bp, a small single copy (SSC) region of 21,620 bp, and a pair of inverted repeats (IRs) of 24,152 bp. The genome has 133 genes, including 89 protein-coding genes, 33 tRNA genes, eight rRNA genes and three pseudogenes. Maximum likelihood approach was employed to construct the phylogenetic relationship among ten ferns including A. latebrosa. The result showed that A. latebrosa was most related to A. costularis as a sister group with 100% bootstrap support. The complete chloroplast genome sequences of A. latebrosa will provide valuable genomic information to further illuminate phylogenetic classification of Cyatheacea. |
| first_indexed | 2024-03-11T13:08:48Z |
| format | Article |
| id | doaj.art-9f6bcd2a832444c5af39d699dd28b9ff |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:08:48Z |
| publishDate | 2021-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-9f6bcd2a832444c5af39d699dd28b9ff2023-11-03T14:28:27ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-07-01672084208510.1080/23802359.2021.19422621942262The complete chloroplast genome of Alsophila latebrosa, a common and widespread tree fern (Cyatheaceae)Zhen Wang0Ruonan Wang1Limin Lin2Ruisi Liu3Sirui Ma4Yongfeng Hong5Ziqing He6Yingjuan Su7Ting Wang8School of Life Sciences, Sun Yat-sen UniversitySchool of Life Sciences, Sun Yat-sen UniversitySchool of Life Sciences, Sun Yat-sen UniversitySchool of Life Sciences, Sun Yat-sen UniversitySchool of Life Sciences, Sun Yat-sen UniversitySchool of Life Sciences, Sun Yat-sen UniversitySchool of Life Sciences, Sun Yat-sen UniversitySchool of Life Sciences, Sun Yat-sen UniversityCollege of Life Sciences, South China Agricultural UniversityAlsophila latebrosa is a common and widespread tree fern of Cyatheaceae. Its complete chloroplast genome is first assembled and reported with 155,724 bp in length, including a large single copy (LSC) region of 85,800 bp, a small single copy (SSC) region of 21,620 bp, and a pair of inverted repeats (IRs) of 24,152 bp. The genome has 133 genes, including 89 protein-coding genes, 33 tRNA genes, eight rRNA genes and three pseudogenes. Maximum likelihood approach was employed to construct the phylogenetic relationship among ten ferns including A. latebrosa. The result showed that A. latebrosa was most related to A. costularis as a sister group with 100% bootstrap support. The complete chloroplast genome sequences of A. latebrosa will provide valuable genomic information to further illuminate phylogenetic classification of Cyatheacea.http://dx.doi.org/10.1080/23802359.2021.1942262alsophila latebrosachloroplast genomephylogenetic analysis |
| spellingShingle | Zhen Wang Ruonan Wang Limin Lin Ruisi Liu Sirui Ma Yongfeng Hong Ziqing He Yingjuan Su Ting Wang The complete chloroplast genome of Alsophila latebrosa, a common and widespread tree fern (Cyatheaceae) Mitochondrial DNA. Part B. Resources alsophila latebrosa chloroplast genome phylogenetic analysis |
| title | The complete chloroplast genome of Alsophila latebrosa, a common and widespread tree fern (Cyatheaceae) |
| title_full | The complete chloroplast genome of Alsophila latebrosa, a common and widespread tree fern (Cyatheaceae) |
| title_fullStr | The complete chloroplast genome of Alsophila latebrosa, a common and widespread tree fern (Cyatheaceae) |
| title_full_unstemmed | The complete chloroplast genome of Alsophila latebrosa, a common and widespread tree fern (Cyatheaceae) |
| title_short | The complete chloroplast genome of Alsophila latebrosa, a common and widespread tree fern (Cyatheaceae) |
| title_sort | complete chloroplast genome of alsophila latebrosa a common and widespread tree fern cyatheaceae |
| topic | alsophila latebrosa chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2021.1942262 |
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