Complete genome sequence of the halophile bacterium Kushneria konosiri X49T, isolated from salt-fermented Konosirus punctatus
Abstract Kushneria konosiri X49T is a member of the Halomonadaceae family within the order Oceanospirillales and can be isolated from salt-fermented larval gizzard shad. The genome of K. konosiri X49T reported here provides a genetic basis for its halophilic character. Diverse genes were involved in...
| Main Authors: | , , , , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
BMC
2018-10-01
|
| Series: | Standards in Genomic Sciences |
| Subjects: | |
| Online Access: | http://link.springer.com/article/10.1186/s40793-018-0324-0 |
| _version_ | 1818031346916786176 |
|---|---|
| author | Ji-Hyun Yun Hojun Sung Hyun Sik Kim Euon Jung Tak Woorim Kang June-Young Lee Dong-Wook Hyun Pil Soo Kim Jin-Woo Bae |
| author_facet | Ji-Hyun Yun Hojun Sung Hyun Sik Kim Euon Jung Tak Woorim Kang June-Young Lee Dong-Wook Hyun Pil Soo Kim Jin-Woo Bae |
| author_sort | Ji-Hyun Yun |
| collection | DOAJ |
| description | Abstract Kushneria konosiri X49T is a member of the Halomonadaceae family within the order Oceanospirillales and can be isolated from salt-fermented larval gizzard shad. The genome of K. konosiri X49T reported here provides a genetic basis for its halophilic character. Diverse genes were involved in salt-in and -out strategies enabling adaptation of X49T to hypersaline environments. Due to resistance to high salt concentrations, genome research of K. konosiri X49T will contribute to the improvement of environmental and biotechnological usage by enhancing understanding of the osmotic equilibrium in the cytoplasm. Its genome consists of 3,584,631 bp, with an average G + C content of 59.1%, and 3261 coding sequences, 12 rRNAs, 66 tRNAs, and 8 miscRNAs. |
| first_indexed | 2024-12-10T05:50:01Z |
| format | Article |
| id | doaj.art-9fc5ca022f424b59bb46900bc6068721 |
| institution | Directory Open Access Journal |
| issn | 1944-3277 |
| language | English |
| last_indexed | 2024-12-10T05:50:01Z |
| publishDate | 2018-10-01 |
| publisher | BMC |
| record_format | Article |
| series | Standards in Genomic Sciences |
| spelling | doaj.art-9fc5ca022f424b59bb46900bc60687212022-12-22T02:00:04ZengBMCStandards in Genomic Sciences1944-32772018-10-011311810.1186/s40793-018-0324-0Complete genome sequence of the halophile bacterium Kushneria konosiri X49T, isolated from salt-fermented Konosirus punctatusJi-Hyun Yun0Hojun Sung1Hyun Sik Kim2Euon Jung Tak3Woorim Kang4June-Young Lee5Dong-Wook Hyun6Pil Soo Kim7Jin-Woo Bae8Department of Life and Nanopharmaceutical Sciences, Kyung Hee UniversityDepartment of Life and Nanopharmaceutical Sciences, Kyung Hee UniversityDepartment of Life and Nanopharmaceutical Sciences, Kyung Hee UniversityDepartment of Life and Nanopharmaceutical Sciences, Kyung Hee UniversityDepartment of Life and Nanopharmaceutical Sciences, Kyung Hee UniversityDepartment of Life and Nanopharmaceutical Sciences, Kyung Hee UniversityDepartment of Life and Nanopharmaceutical Sciences, Kyung Hee UniversityDepartment of Life and Nanopharmaceutical Sciences, Kyung Hee UniversityDepartment of Life and Nanopharmaceutical Sciences, Kyung Hee UniversityAbstract Kushneria konosiri X49T is a member of the Halomonadaceae family within the order Oceanospirillales and can be isolated from salt-fermented larval gizzard shad. The genome of K. konosiri X49T reported here provides a genetic basis for its halophilic character. Diverse genes were involved in salt-in and -out strategies enabling adaptation of X49T to hypersaline environments. Due to resistance to high salt concentrations, genome research of K. konosiri X49T will contribute to the improvement of environmental and biotechnological usage by enhancing understanding of the osmotic equilibrium in the cytoplasm. Its genome consists of 3,584,631 bp, with an average G + C content of 59.1%, and 3261 coding sequences, 12 rRNAs, 66 tRNAs, and 8 miscRNAs.http://link.springer.com/article/10.1186/s40793-018-0324-0Kushneria konosiriHalomonadaceaeHalophileComplete genomeKonosirus punctatus |
| spellingShingle | Ji-Hyun Yun Hojun Sung Hyun Sik Kim Euon Jung Tak Woorim Kang June-Young Lee Dong-Wook Hyun Pil Soo Kim Jin-Woo Bae Complete genome sequence of the halophile bacterium Kushneria konosiri X49T, isolated from salt-fermented Konosirus punctatus Standards in Genomic Sciences Kushneria konosiri Halomonadaceae Halophile Complete genome Konosirus punctatus |
| title | Complete genome sequence of the halophile bacterium Kushneria konosiri X49T, isolated from salt-fermented Konosirus punctatus |
| title_full | Complete genome sequence of the halophile bacterium Kushneria konosiri X49T, isolated from salt-fermented Konosirus punctatus |
| title_fullStr | Complete genome sequence of the halophile bacterium Kushneria konosiri X49T, isolated from salt-fermented Konosirus punctatus |
| title_full_unstemmed | Complete genome sequence of the halophile bacterium Kushneria konosiri X49T, isolated from salt-fermented Konosirus punctatus |
| title_short | Complete genome sequence of the halophile bacterium Kushneria konosiri X49T, isolated from salt-fermented Konosirus punctatus |
| title_sort | complete genome sequence of the halophile bacterium kushneria konosiri x49t isolated from salt fermented konosirus punctatus |
| topic | Kushneria konosiri Halomonadaceae Halophile Complete genome Konosirus punctatus |
| url | http://link.springer.com/article/10.1186/s40793-018-0324-0 |
| work_keys_str_mv | AT jihyunyun completegenomesequenceofthehalophilebacteriumkushneriakonosirix49tisolatedfromsaltfermentedkonosiruspunctatus AT hojunsung completegenomesequenceofthehalophilebacteriumkushneriakonosirix49tisolatedfromsaltfermentedkonosiruspunctatus AT hyunsikkim completegenomesequenceofthehalophilebacteriumkushneriakonosirix49tisolatedfromsaltfermentedkonosiruspunctatus AT euonjungtak completegenomesequenceofthehalophilebacteriumkushneriakonosirix49tisolatedfromsaltfermentedkonosiruspunctatus AT woorimkang completegenomesequenceofthehalophilebacteriumkushneriakonosirix49tisolatedfromsaltfermentedkonosiruspunctatus AT juneyounglee completegenomesequenceofthehalophilebacteriumkushneriakonosirix49tisolatedfromsaltfermentedkonosiruspunctatus AT dongwookhyun completegenomesequenceofthehalophilebacteriumkushneriakonosirix49tisolatedfromsaltfermentedkonosiruspunctatus AT pilsookim completegenomesequenceofthehalophilebacteriumkushneriakonosirix49tisolatedfromsaltfermentedkonosiruspunctatus AT jinwoobae completegenomesequenceofthehalophilebacteriumkushneriakonosirix49tisolatedfromsaltfermentedkonosiruspunctatus |