Sequencing and de novo transcriptome assembly of Anthopleura dowii Verrill (1869), from Mexico
Next-generation technologies for determination of genomics and transcriptomics composition have a wide range of applications. Moreover, the development of tools for big data set analysis has allowed the identification of molecules and networks involved in metabolism, evolution or behavior. By natura...
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| Format: | Article |
| Language: | English |
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Elsevier
2017-03-01
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| Series: | Genomics Data |
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| Online Access: | http://www.sciencedirect.com/science/article/pii/S221359601630174X |
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| author | Jorge-Tonatiuh Ayala-Sumuano Alexei Licea-Navarro Enrique Rudiño-Piñera Estefanía Rodríguez Claudia Rodríguez-Almazán |
| author_facet | Jorge-Tonatiuh Ayala-Sumuano Alexei Licea-Navarro Enrique Rudiño-Piñera Estefanía Rodríguez Claudia Rodríguez-Almazán |
| author_sort | Jorge-Tonatiuh Ayala-Sumuano |
| collection | DOAJ |
| description | Next-generation technologies for determination of genomics and transcriptomics composition have a wide range of applications. Moreover, the development of tools for big data set analysis has allowed the identification of molecules and networks involved in metabolism, evolution or behavior. By natural habitats aquatic organisms have implemented molecular strategies for survival, including the production and secretion of toxic compounds for their predators; therefore these organisms are possible sources of proteins or peptides with potential biotechnological application. In the last decade anthozoans, mainly octocorals but also sea anemones, have been proben to be a source of natural products. Members of the genus Anthopleura are one of the best known and most studied sea anemones because they are common constituents of rocky intertidal communities and show interesting ecological and biological phenomena (e.g. intraespecific competition, symbiosis, etc.); however, many aspects of these taxa remain in need to be analyzed. This work describes the transcriptome sequencing of Anthopleura dowii Verrill, 1869 (Cnidaria: Anthozoa: Actiniaria); this is the first report of this kind for these species. The data set used to construct the transcriptome has been deposited on NCBI's database. Illumina sequence reads are available under BioProject accession number PRJNA329297 and Sequence Read Archive under accession number SRP078992. |
| first_indexed | 2024-12-20T02:16:23Z |
| format | Article |
| id | doaj.art-9fec064984234b338ec85e6b0be444ea |
| institution | Directory Open Access Journal |
| issn | 2213-5960 |
| language | English |
| last_indexed | 2024-12-20T02:16:23Z |
| publishDate | 2017-03-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Genomics Data |
| spelling | doaj.art-9fec064984234b338ec85e6b0be444ea2022-12-21T19:56:56ZengElsevierGenomics Data2213-59602017-03-0111C929410.1016/j.gdata.2016.11.022Sequencing and de novo transcriptome assembly of Anthopleura dowii Verrill (1869), from MexicoJorge-Tonatiuh Ayala-Sumuano0Alexei Licea-Navarro1Enrique Rudiño-Piñera2Estefanía Rodríguez3Claudia Rodríguez-Almazán4Instituto de Neurobilogía, Universidad Nacional Autónoma de México, Blvd. Juriquilla 30001, Juriquilla, Querétaro, MéxicoDepartamento de Innovación Biomédica, Centro de Investigación Científica y de Educación Superior de Ensenada (CICESE), Baja California, C.P. 22860, MéxicoDepartamento de Medicina Molecular y Bioprocesos, Instituto de Biotecnología, Universidad Nacional Autónoma de México. Av. Universidad 2001, C.P. 62210, Cuernavaca, Morelos, MéxicoDivision of Invertebrate Zoology, American Museum of Natural History, Central Park West at 79th Street, New York NY 10024, USADepartamento de Medicina Molecular y Bioprocesos, Instituto de Biotecnología, Universidad Nacional Autónoma de México. Av. Universidad 2001, C.P. 62210, Cuernavaca, Morelos, MéxicoNext-generation technologies for determination of genomics and transcriptomics composition have a wide range of applications. Moreover, the development of tools for big data set analysis has allowed the identification of molecules and networks involved in metabolism, evolution or behavior. By natural habitats aquatic organisms have implemented molecular strategies for survival, including the production and secretion of toxic compounds for their predators; therefore these organisms are possible sources of proteins or peptides with potential biotechnological application. In the last decade anthozoans, mainly octocorals but also sea anemones, have been proben to be a source of natural products. Members of the genus Anthopleura are one of the best known and most studied sea anemones because they are common constituents of rocky intertidal communities and show interesting ecological and biological phenomena (e.g. intraespecific competition, symbiosis, etc.); however, many aspects of these taxa remain in need to be analyzed. This work describes the transcriptome sequencing of Anthopleura dowii Verrill, 1869 (Cnidaria: Anthozoa: Actiniaria); this is the first report of this kind for these species. The data set used to construct the transcriptome has been deposited on NCBI's database. Illumina sequence reads are available under BioProject accession number PRJNA329297 and Sequence Read Archive under accession number SRP078992.http://www.sciencedirect.com/science/article/pii/S221359601630174XAnthopleura dowiiSea anemoneIlluminaTranscriptome |
| spellingShingle | Jorge-Tonatiuh Ayala-Sumuano Alexei Licea-Navarro Enrique Rudiño-Piñera Estefanía Rodríguez Claudia Rodríguez-Almazán Sequencing and de novo transcriptome assembly of Anthopleura dowii Verrill (1869), from Mexico Genomics Data Anthopleura dowii Sea anemone Illumina Transcriptome |
| title | Sequencing and de novo transcriptome assembly of Anthopleura dowii Verrill (1869), from Mexico |
| title_full | Sequencing and de novo transcriptome assembly of Anthopleura dowii Verrill (1869), from Mexico |
| title_fullStr | Sequencing and de novo transcriptome assembly of Anthopleura dowii Verrill (1869), from Mexico |
| title_full_unstemmed | Sequencing and de novo transcriptome assembly of Anthopleura dowii Verrill (1869), from Mexico |
| title_short | Sequencing and de novo transcriptome assembly of Anthopleura dowii Verrill (1869), from Mexico |
| title_sort | sequencing and de novo transcriptome assembly of anthopleura dowii verrill 1869 from mexico |
| topic | Anthopleura dowii Sea anemone Illumina Transcriptome |
| url | http://www.sciencedirect.com/science/article/pii/S221359601630174X |
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