Erratum: Ksak: a high-throughput tool for alignment-free phylogenetics

Erratum: Ksak: a high-throughput tool for alignment-free phylogenetics

Bibliographic Details
Main Author:	Frontiers Production Office
Format:	Article
Language:	English
Published:	Frontiers Media S.A. 2023-05-01
Series:	Frontiers in Microbiology
Subjects:	k-mer phylogentic tree alignment free open source microbiome
Online Access:	https://www.frontiersin.org/articles/10.3389/fmicb.2023.1212612/full

Similar Items

Ksak: A high-throughput tool for alignment-free phylogenetics
by: Xuemei Liu, et al.
Published: (2023-03-01)

An alignment-free method for detection of missing regions for phylogenetic analysis
by: Rubyeat Islam, et al.
Published: (2024-06-01)

An alignment-free method for phylogeny estimation using maximum likelihood
by: Tasfia Zahin, et al.
Published: (2025-03-01)

Alignment-Free Analysis of Whole-Genome Sequences From Symbiodiniaceae Reveals Different Phylogenetic Signals in Distinct Regions
by: Rosalyn Lo, et al.
Published: (2022-04-01)

KITSUNE: A Tool for Identifying Empirically Optimal K-mer Length for Alignment-Free Phylogenomic Analysis
by: Natapol Pornputtapong, et al.
Published: (2020-09-01)

An alignment- and reference-free strategy using k-mer present pattern for population genomic analyses
by: Guohui Shi, et al.
Published: (2024-06-01)

The complete mitochondrial genome of Tylototriton anhuiensis and implications for its taxonomy
by: Xue Han, et al.
Published: (2018-07-01)

Use of an Alignment-Free Method for the Geographical Discrimination of GTPVs Based on the GPCR Sequences
by: Tesfaye Rufael Chibssa, et al.
Published: (2021-04-01)

The complete mitochondrial genome of Protobothrops kaulbacki (Squamata: Viperidae)
by: Xing Kang, et al.
Published: (2017-01-01)

The complete mitogenome of Metopograpsus quadridentatus and phylogenetic analysis
by: Zhengfei Wang, et al.
Published: (2018-07-01)

The complete mitochondrial genome of Rhipicephalus haemaphysaloides and its phylogenetic analysis
by: Shaobo Tang, et al.
Published: (2024-04-01)

INSIDER: alignment-free detection of foreign DNA sequences
by: Aidan P. Tay, et al.
Published: (2021-01-01)

Next-generation sequencing yields the complete mitogenome of Caridina multidentata and phylogenetic analysis
by: Zhengfei Wang, et al.
Published: (2018-01-01)

Method for the Identification of Plant DNA in Food Using Alignment-Free Analysis of Sequencing Reads: A Case Study on Lupin
by: Kairi Raime, et al.
Published: (2020-05-01)

Fairy: fast approximate coverage for multi-sample metagenomic binning
by: Jim Shaw, et al.
Published: (2024-08-01)

Complete mitochondrial DNA sequence of Alboglossiphonia lata Oka, 1910 (Rhynchobdellida: Glossiphoniidae) and its phylogenetic analysis
by: Panpan Jin, et al.
Published: (2024-05-01)

X-Mapper: fast and accurate sequence alignment via gapped x-mers
by: Jeffry M. Gaston, et al.
Published: (2025-01-01)

CGRWDL: alignment-free phylogeny reconstruction method for viruses based on chaos game representation weighted by dynamical language model
by: Ting Wang, et al.
Published: (2024-03-01)

Next-generation phylogenomics
by: Chan Cheong Xin, et al.
Published: (2013-01-01)

Fast lightweight accurate xenograft sorting
by: Jens Zentgraf, et al.
Published: (2021-04-01)

Limitations of alignment-free tools in total RNA-seq quantification
by: Douglas C. Wu, et al.
Published: (2018-07-01)

Erratum: Prospects for 3D-printing of clear aligners—a narrative review
by: Frontiers Production Office
Published: (2024-09-01)

FOCUS: an alignment-free model to identify organisms in metagenomes using non-negative least squares
by: Genivaldo Gueiros Z. Silva, et al.
Published: (2014-06-01)

Syncmers are more sensitive than minimizers for selecting conserved k‑mers in biological sequences
by: Robert Edgar
Published: (2021-02-01)

A new profiling approach for DNA sequences based on the nucleotides' physicochemical features for accurate analysis of SARS-CoV-2 genomes
by: Saeedeh Akbari Rokn Abadi, et al.
Published: (2023-05-01)

Erratum: FluentDNA: Nucleotide Visualization of Whole Genomes, Annotations, and Alignments
by: Frontiers Production Office
Published: (2020-07-01)

A greedy alignment-free distance estimator for phylogenetic inference
by: Sharma V. Thankachan, et al.
Published: (2017-06-01)

Phylogenetic Analysis of HIV-1 Genomes Based on the Position-Weighted K-mers Method
by: Yuanlin Ma, et al.
Published: (2020-02-01)

Phylogenetic and AlphaFold predicted structure analyses provide insights for A1 aspartic protease family classification in Arabidopsis
by: Yanling Duan, et al.
Published: (2023-02-01)

Evaluating cutinase from Fusarium oxysporum as a biocatalyst for the degradation of nine synthetic polymer
by: Maycon Vinicius Damasceno de Oliveira, et al.
Published: (2025-01-01)

A fast alignment-free bioinformatics procedure to infer accurate distance-based phylogenetic trees from genome assemblies
by: Alexis Criscuolo
Published: (2019-06-01)

Phylogenetic Study of Mangifera laurina and its Related Species Using cpDNA trnL-F Spacer Markers
by: FITMAWATI, et al.
Published: (2010-03-01)

Constructing phylogenetic trees for microbiome data analysis: A mini-review
by: Ruitao Liu, et al.
Published: (2024-12-01)

Reference-free inferring of transcriptomic events in cancer cells on single-cell data
by: Batuhan Eralp, et al.
Published: (2024-05-01)

Erratum: Gut and genital tract microbiomes: dysbiosis and link to gynecological disorders
by: Frontiers Production Office
Published: (2023-05-01)

CAM: an alignment-free method to recover phylogenies using codon aversion motifs
by: Justin B. Miller, et al.
Published: (2019-06-01)

A New Alignment-Free Whole Metagenome Comparison Tool and Its Application on Gut Microbiomes of Wild Giant Pandas
by: Jiuhong Dong, et al.
Published: (2020-06-01)

SaAlign: Multiple DNA/RNA sequence alignment and phylogenetic tree construction tool for ultra-large datasets and ultra-long sequences based on suffix array
by: Ziyuan Wang, et al.
Published: (2022-01-01)

Efficient implied alignment
by: Alex J. Washburn, et al.
Published: (2020-07-01)

Phylogenetic Study of Mangifera laurina and its Related Species Using cpDNA trnL-F Spacer Markers
by: FITMAWATI, et al.
Published: (2010-03-01)