The complete chloroplast genome sequence of Michelia chapensis Dandy: an endangered species in China
The first complete chloroplast genome (cpDNA) sequence of Michelia chapensis was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 160,138 bp in length, contains a large single-copy region (LSC) of 88,164 bp and a small single-copy region (SSC) of 18,824 bp, which w...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-04-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1742619 |
| _version_ | 1797639305156362240 |
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| author | Yongkang Sima Yunqing Li Xiaolong Yuan Yi Wang |
| author_facet | Yongkang Sima Yunqing Li Xiaolong Yuan Yi Wang |
| author_sort | Yongkang Sima |
| collection | DOAJ |
| description | The first complete chloroplast genome (cpDNA) sequence of Michelia chapensis was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 160,138 bp in length, contains a large single-copy region (LSC) of 88,164 bp and a small single-copy region (SSC) of 18,824 bp, which were separated by a pair of inverted repeats (IR) regions of 26,575 bp. The genome contains 132 genes, including 87 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. Further phylogenomic analysis showed that M. chapensis is closed to M. maudiae and M. wilsonii in the tribe Michelieae. |
| first_indexed | 2024-03-11T13:14:54Z |
| format | Article |
| id | doaj.art-a1d373eebe4a45eca1e49681bacd290e |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:14:54Z |
| publishDate | 2020-04-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-a1d373eebe4a45eca1e49681bacd290e2023-11-03T13:50:19ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-04-01521594159510.1080/23802359.2020.17426191742619The complete chloroplast genome sequence of Michelia chapensis Dandy: an endangered species in ChinaYongkang Sima0Yunqing Li1Xiaolong Yuan2Yi Wang3Laboratory of Forest Plant Cultivation and Utilization, Yunnan Academy of Forestry & Grassland Science and The Key Laboratory of Rare and Endangered Forest Plants of State Forestry AdministrationLaboratory of Forest Plant Cultivation and Utilization, Yunnan Academy of Forestry & Grassland Science and The Key Laboratory of Rare and Endangered Forest Plants of State Forestry AdministrationLaboratory of Forest Plant Cultivation and Utilization, Yunnan Academy of Forestry & Grassland Science and The Key Laboratory of Rare and Endangered Forest Plants of State Forestry AdministrationLaboratory of Forest Plant Cultivation and Utilization, Yunnan Academy of Forestry & Grassland Science and The Key Laboratory of Rare and Endangered Forest Plants of State Forestry AdministrationThe first complete chloroplast genome (cpDNA) sequence of Michelia chapensis was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 160,138 bp in length, contains a large single-copy region (LSC) of 88,164 bp and a small single-copy region (SSC) of 18,824 bp, which were separated by a pair of inverted repeats (IR) regions of 26,575 bp. The genome contains 132 genes, including 87 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. Further phylogenomic analysis showed that M. chapensis is closed to M. maudiae and M. wilsonii in the tribe Michelieae.http://dx.doi.org/10.1080/23802359.2020.1742619michelia chapensis dandychloroplastillumina sequencingphylogenetic analysis |
| spellingShingle | Yongkang Sima Yunqing Li Xiaolong Yuan Yi Wang The complete chloroplast genome sequence of Michelia chapensis Dandy: an endangered species in China Mitochondrial DNA. Part B. Resources michelia chapensis dandy chloroplast illumina sequencing phylogenetic analysis |
| title | The complete chloroplast genome sequence of Michelia chapensis Dandy: an endangered species in China |
| title_full | The complete chloroplast genome sequence of Michelia chapensis Dandy: an endangered species in China |
| title_fullStr | The complete chloroplast genome sequence of Michelia chapensis Dandy: an endangered species in China |
| title_full_unstemmed | The complete chloroplast genome sequence of Michelia chapensis Dandy: an endangered species in China |
| title_short | The complete chloroplast genome sequence of Michelia chapensis Dandy: an endangered species in China |
| title_sort | complete chloroplast genome sequence of michelia chapensis dandy an endangered species in china |
| topic | michelia chapensis dandy chloroplast illumina sequencing phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2020.1742619 |
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