Characterization of the complete plastid genome of Rauvolfia verticillata (Apocynaceae), with its phylogenetic analysis
Rauvolfia verticillata is a medical plant (Apocynaceae) widely distributed from India to China, the Indo-China Peninsula, Indonesia, and the Philippines. The first complete plastid genome sequence of the species reported here was 155,856 bp in length, with the large single-copy (LSC) region of 86,08...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1693287 |
| _version_ | 1827773211854503936 |
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| author | Wenna Chen Weiling Liang An Li Jie Ma |
| author_facet | Wenna Chen Weiling Liang An Li Jie Ma |
| author_sort | Wenna Chen |
| collection | DOAJ |
| description | Rauvolfia verticillata is a medical plant (Apocynaceae) widely distributed from India to China, the Indo-China Peninsula, Indonesia, and the Philippines. The first complete plastid genome sequence of the species reported here was 155,856 bp in length, with the large single-copy (LSC) region of 86,085 bp, the small single-copy (SSC) region of 18,299 bp, and two inverted repeats (IRa and IRb) of 25,736 bp. The plastome contained 113 unique genes, including 79 protein-coding genes, 4 ribosomal RNA genes, and 30 transfer RNA genes. The overall GC content was 37.92%. The result from phylogenetic analysis suggests that Rauvolfia is closely related to the genus Catharanthus. |
| first_indexed | 2024-03-11T13:18:49Z |
| format | Article |
| id | doaj.art-a21cde105486489ba0b715e2cf691511 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:18:49Z |
| publishDate | 2019-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-a21cde105486489ba0b715e2cf6915112023-11-03T10:38:52ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-07-01424190419110.1080/23802359.2019.16932871693287Characterization of the complete plastid genome of Rauvolfia verticillata (Apocynaceae), with its phylogenetic analysisWenna Chen0Weiling Liang1An Li2Jie Ma3Hebei University of EngineeringHebei University of EngineeringHebei University of EngineeringHebei University of EngineeringRauvolfia verticillata is a medical plant (Apocynaceae) widely distributed from India to China, the Indo-China Peninsula, Indonesia, and the Philippines. The first complete plastid genome sequence of the species reported here was 155,856 bp in length, with the large single-copy (LSC) region of 86,085 bp, the small single-copy (SSC) region of 18,299 bp, and two inverted repeats (IRa and IRb) of 25,736 bp. The plastome contained 113 unique genes, including 79 protein-coding genes, 4 ribosomal RNA genes, and 30 transfer RNA genes. The overall GC content was 37.92%. The result from phylogenetic analysis suggests that Rauvolfia is closely related to the genus Catharanthus.http://dx.doi.org/10.1080/23802359.2019.1693287rauvolfia verticillataapocynaceaeplastid genomephylogenomics |
| spellingShingle | Wenna Chen Weiling Liang An Li Jie Ma Characterization of the complete plastid genome of Rauvolfia verticillata (Apocynaceae), with its phylogenetic analysis Mitochondrial DNA. Part B. Resources rauvolfia verticillata apocynaceae plastid genome phylogenomics |
| title | Characterization of the complete plastid genome of Rauvolfia verticillata (Apocynaceae), with its phylogenetic analysis |
| title_full | Characterization of the complete plastid genome of Rauvolfia verticillata (Apocynaceae), with its phylogenetic analysis |
| title_fullStr | Characterization of the complete plastid genome of Rauvolfia verticillata (Apocynaceae), with its phylogenetic analysis |
| title_full_unstemmed | Characterization of the complete plastid genome of Rauvolfia verticillata (Apocynaceae), with its phylogenetic analysis |
| title_short | Characterization of the complete plastid genome of Rauvolfia verticillata (Apocynaceae), with its phylogenetic analysis |
| title_sort | characterization of the complete plastid genome of rauvolfia verticillata apocynaceae with its phylogenetic analysis |
| topic | rauvolfia verticillata apocynaceae plastid genome phylogenomics |
| url | http://dx.doi.org/10.1080/23802359.2019.1693287 |
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