A Review of Isothermal Amplification Methods and Food-Origin Inhibitors against Detecting Food-Borne Pathogens
The isothermal amplification method, a molecular-based diagnostic technology, such as loop-mediated isothermal amplification (LAMP) and recombinase polymerase amplification (RPA), is widely used as an alternative to the time-consuming and labor-intensive culture-based detection method. However, food...
| Main Authors: | , , |
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| Format: | Article |
| Language: | English |
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MDPI AG
2022-01-01
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| Series: | Foods |
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| Online Access: | https://www.mdpi.com/2304-8158/11/3/322 |
| _version_ | 1797487856521838592 |
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| author | Ye-Ji Moon So-Young Lee Se-Wook Oh |
| author_facet | Ye-Ji Moon So-Young Lee Se-Wook Oh |
| author_sort | Ye-Ji Moon |
| collection | DOAJ |
| description | The isothermal amplification method, a molecular-based diagnostic technology, such as loop-mediated isothermal amplification (LAMP) and recombinase polymerase amplification (RPA), is widely used as an alternative to the time-consuming and labor-intensive culture-based detection method. However, food matrices or other compounds can inhibit molecular-based diagnostic technologies, causing reduced detection efficiencies, and false-negative results. These inhibitors originating from food are polysaccharides and polyphenolic compounds in berries, seafood, and vegetables. Additionally, magnesium ions needed for amplification reactions can also inhibit molecular-based diagnostics. The successful removal of inhibitors originating from food and molecular amplification reaction is therefore proposed to enhance the efficiency of molecular-based diagnostics and allow accurate detection of food-borne pathogens. Among molecular-based diagnostics, PCR inhibitors have been reported. Nevertheless, reports on the mechanism and removal of isothermal amplification method inhibitors are insufficient. Therefore, this review describes inhibitors originating from food and some compounds inhibiting the detection of food-borne pathogens during isothermal amplification. |
| first_indexed | 2024-03-09T23:53:46Z |
| format | Article |
| id | doaj.art-a2a30290a06c40488c4d2225f2d96dbd |
| institution | Directory Open Access Journal |
| issn | 2304-8158 |
| language | English |
| last_indexed | 2024-03-09T23:53:46Z |
| publishDate | 2022-01-01 |
| publisher | MDPI AG |
| record_format | Article |
| series | Foods |
| spelling | doaj.art-a2a30290a06c40488c4d2225f2d96dbd2023-11-23T16:28:58ZengMDPI AGFoods2304-81582022-01-0111332210.3390/foods11030322A Review of Isothermal Amplification Methods and Food-Origin Inhibitors against Detecting Food-Borne PathogensYe-Ji Moon0So-Young Lee1Se-Wook Oh2Department of Food and Nutrition, Kookmin University, Seoul 136-702, KoreaDepartment of Food and Nutrition, Kookmin University, Seoul 136-702, KoreaDepartment of Food and Nutrition, Kookmin University, Seoul 136-702, KoreaThe isothermal amplification method, a molecular-based diagnostic technology, such as loop-mediated isothermal amplification (LAMP) and recombinase polymerase amplification (RPA), is widely used as an alternative to the time-consuming and labor-intensive culture-based detection method. However, food matrices or other compounds can inhibit molecular-based diagnostic technologies, causing reduced detection efficiencies, and false-negative results. These inhibitors originating from food are polysaccharides and polyphenolic compounds in berries, seafood, and vegetables. Additionally, magnesium ions needed for amplification reactions can also inhibit molecular-based diagnostics. The successful removal of inhibitors originating from food and molecular amplification reaction is therefore proposed to enhance the efficiency of molecular-based diagnostics and allow accurate detection of food-borne pathogens. Among molecular-based diagnostics, PCR inhibitors have been reported. Nevertheless, reports on the mechanism and removal of isothermal amplification method inhibitors are insufficient. Therefore, this review describes inhibitors originating from food and some compounds inhibiting the detection of food-borne pathogens during isothermal amplification.https://www.mdpi.com/2304-8158/11/3/322molecular amplificationdetection methodfood metrixbacteriainhibition |
| spellingShingle | Ye-Ji Moon So-Young Lee Se-Wook Oh A Review of Isothermal Amplification Methods and Food-Origin Inhibitors against Detecting Food-Borne Pathogens Foods molecular amplification detection method food metrix bacteria inhibition |
| title | A Review of Isothermal Amplification Methods and Food-Origin Inhibitors against Detecting Food-Borne Pathogens |
| title_full | A Review of Isothermal Amplification Methods and Food-Origin Inhibitors against Detecting Food-Borne Pathogens |
| title_fullStr | A Review of Isothermal Amplification Methods and Food-Origin Inhibitors against Detecting Food-Borne Pathogens |
| title_full_unstemmed | A Review of Isothermal Amplification Methods and Food-Origin Inhibitors against Detecting Food-Borne Pathogens |
| title_short | A Review of Isothermal Amplification Methods and Food-Origin Inhibitors against Detecting Food-Borne Pathogens |
| title_sort | review of isothermal amplification methods and food origin inhibitors against detecting food borne pathogens |
| topic | molecular amplification detection method food metrix bacteria inhibition |
| url | https://www.mdpi.com/2304-8158/11/3/322 |
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