Dataset of the microbiome composition in skin lesions caused by lumpy skin disease virus via 16s rRNA massive parallel sequencing
Lumpy Skin Disease (LSD) is a highly contagious viral disease affecting cattle mainly and induced by the Lumpy Skin Virus within the Capripoxvirus genus of the family Poxviridae. LSD infected animals exhibit pyrexia and sudden appearance of localized or generalized skin nodules that may slough leavi...
| Main Authors: | , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Elsevier
2019-12-01
|
| Series: | Data in Brief |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2352340919311199 |
| _version_ | 1818583946011607040 |
|---|---|
| author | Sören Hansen Rodrigo Pessôa Andrezza Nascimento Mohamed El-Tholoth Ahmed Abd El Wahed Sabri S. Sanabani |
| author_facet | Sören Hansen Rodrigo Pessôa Andrezza Nascimento Mohamed El-Tholoth Ahmed Abd El Wahed Sabri S. Sanabani |
| author_sort | Sören Hansen |
| collection | DOAJ |
| description | Lumpy Skin Disease (LSD) is a highly contagious viral disease affecting cattle mainly and induced by the Lumpy Skin Virus within the Capripoxvirus genus of the family Poxviridae. LSD infected animals exhibit pyrexia and sudden appearance of localized or generalized skin nodules that may slough leaving ulcers. The disease has negative economic impacts as a result of hide damage, mastitis, infertility and losses in milk production. Secondary bacterial infection in the affected skin lesions can increase the severity and prolong the course of the disease. Little is known about the microbiome in the ulcerated skin sites. Therefore, the present study was directed to identify the prevalent bacterial communities in affected lesion via the 16s rRNA gene sequencing. Up to 98 species were found in the samples, most of them belonging to the phyla of Proteobacteria, followed by Firmicutes, Actinobacteria, and Bacteroidetes. All found bacterial species are known as opportunistic pathogens, but can withstand the inflammatory reaction. Keywords: Lumpy skin disease virus, Microbiome, 16s rRNA sequencing |
| first_indexed | 2024-12-16T08:13:21Z |
| format | Article |
| id | doaj.art-a3384fc9b00b4e85b8f8276b59812709 |
| institution | Directory Open Access Journal |
| issn | 2352-3409 |
| language | English |
| last_indexed | 2024-12-16T08:13:21Z |
| publishDate | 2019-12-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Data in Brief |
| spelling | doaj.art-a3384fc9b00b4e85b8f8276b598127092022-12-21T22:38:19ZengElsevierData in Brief2352-34092019-12-0127Dataset of the microbiome composition in skin lesions caused by lumpy skin disease virus via 16s rRNA massive parallel sequencingSören Hansen0Rodrigo Pessôa1Andrezza Nascimento2Mohamed El-Tholoth3Ahmed Abd El Wahed4Sabri S. Sanabani5Division of Microbiology and Animal Hygiene, University of Goettingen, Burckhardtweg 2, D-37077, Göttingen, GermanyLaboratory of Dermatology and Immunodeficiencies, LIM-56, Department of Dermatology, Tropical Medicine Institute of São Paulo, University of São Paulo, Av. Dr. Enéas Carvalho de Aguiar, 470 - Jardim America, São Paulo, SP, 05403-000, BrazilLaboratory of Dermatology and Immunodeficiencies, LIM-56, Department of Dermatology, Tropical Medicine Institute of São Paulo, University of São Paulo, Av. Dr. Enéas Carvalho de Aguiar, 470 - Jardim America, São Paulo, SP, 05403-000, BrazilDepartment of Virology, Faculty of Veterinary Medicine, Mansoura University, 35516, Mansoura, EgyptDivision of Microbiology and Animal Hygiene, University of Goettingen, Burckhardtweg 2, D-37077, Göttingen, Germany; Corresponding author.Laboratory of Dermatology and Immunodeficiencies, LIM-56, Department of Dermatology, Tropical Medicine Institute of São Paulo, University of São Paulo, Av. Dr. Enéas Carvalho de Aguiar, 470 - Jardim America, São Paulo, SP, 05403-000, BrazilLumpy Skin Disease (LSD) is a highly contagious viral disease affecting cattle mainly and induced by the Lumpy Skin Virus within the Capripoxvirus genus of the family Poxviridae. LSD infected animals exhibit pyrexia and sudden appearance of localized or generalized skin nodules that may slough leaving ulcers. The disease has negative economic impacts as a result of hide damage, mastitis, infertility and losses in milk production. Secondary bacterial infection in the affected skin lesions can increase the severity and prolong the course of the disease. Little is known about the microbiome in the ulcerated skin sites. Therefore, the present study was directed to identify the prevalent bacterial communities in affected lesion via the 16s rRNA gene sequencing. Up to 98 species were found in the samples, most of them belonging to the phyla of Proteobacteria, followed by Firmicutes, Actinobacteria, and Bacteroidetes. All found bacterial species are known as opportunistic pathogens, but can withstand the inflammatory reaction. Keywords: Lumpy skin disease virus, Microbiome, 16s rRNA sequencinghttp://www.sciencedirect.com/science/article/pii/S2352340919311199 |
| spellingShingle | Sören Hansen Rodrigo Pessôa Andrezza Nascimento Mohamed El-Tholoth Ahmed Abd El Wahed Sabri S. Sanabani Dataset of the microbiome composition in skin lesions caused by lumpy skin disease virus via 16s rRNA massive parallel sequencing Data in Brief |
| title | Dataset of the microbiome composition in skin lesions caused by lumpy skin disease virus via 16s rRNA massive parallel sequencing |
| title_full | Dataset of the microbiome composition in skin lesions caused by lumpy skin disease virus via 16s rRNA massive parallel sequencing |
| title_fullStr | Dataset of the microbiome composition in skin lesions caused by lumpy skin disease virus via 16s rRNA massive parallel sequencing |
| title_full_unstemmed | Dataset of the microbiome composition in skin lesions caused by lumpy skin disease virus via 16s rRNA massive parallel sequencing |
| title_short | Dataset of the microbiome composition in skin lesions caused by lumpy skin disease virus via 16s rRNA massive parallel sequencing |
| title_sort | dataset of the microbiome composition in skin lesions caused by lumpy skin disease virus via 16s rrna massive parallel sequencing |
| url | http://www.sciencedirect.com/science/article/pii/S2352340919311199 |
| work_keys_str_mv | AT sorenhansen datasetofthemicrobiomecompositioninskinlesionscausedbylumpyskindiseasevirusvia16srrnamassiveparallelsequencing AT rodrigopessoa datasetofthemicrobiomecompositioninskinlesionscausedbylumpyskindiseasevirusvia16srrnamassiveparallelsequencing AT andrezzanascimento datasetofthemicrobiomecompositioninskinlesionscausedbylumpyskindiseasevirusvia16srrnamassiveparallelsequencing AT mohamedeltholoth datasetofthemicrobiomecompositioninskinlesionscausedbylumpyskindiseasevirusvia16srrnamassiveparallelsequencing AT ahmedabdelwahed datasetofthemicrobiomecompositioninskinlesionscausedbylumpyskindiseasevirusvia16srrnamassiveparallelsequencing AT sabrissanabani datasetofthemicrobiomecompositioninskinlesionscausedbylumpyskindiseasevirusvia16srrnamassiveparallelsequencing |