The complete chloroplast genome sequence and phylogenetic analysis of Ilex × Koehneana ‘Wirt L. Winn’ (Aquifoliaceae)
Ilex × Koehneana ‘Wirt L. Winn’, an important ornamental tree, has been widely distributed in southeastern China. In this study, we assembled and characterized the complete chloroplast (cp) genome of I. Koehneana to investigate its phylogenetic relationship. The whole cp genome of I. Koehneana is 15...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-03-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1882904 |
| _version_ | 1797638954703388672 |
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| author | Xinran Chong Yunlong Li Yanwei Zhou Hong Chen Xinzhi Li Naiwei Li Xiaoqing Lu Fan Zhang |
| author_facet | Xinran Chong Yunlong Li Yanwei Zhou Hong Chen Xinzhi Li Naiwei Li Xiaoqing Lu Fan Zhang |
| author_sort | Xinran Chong |
| collection | DOAJ |
| description | Ilex × Koehneana ‘Wirt L. Winn’, an important ornamental tree, has been widely distributed in southeastern China. In this study, we assembled and characterized the complete chloroplast (cp) genome of I. Koehneana to investigate its phylogenetic relationship. The whole cp genome of I. Koehneana is 157,538 bp, which contained a large single-copy (LSC) region of 87,055 bp and a small single-copy (SSC) region of 18,429 bp, and a pair of inverted repeats (IR) of 52,054 bp. A total of 137 genes, including 90 protein-coding genes, eight rRNAs, and 39 tRNAs, were identified. Phylogenetic analysis based on 74 conserved protein-coding genes revealed that I. Koehneana is closely related to I. ‘tall boy’. |
| first_indexed | 2024-03-11T13:10:50Z |
| format | Article |
| id | doaj.art-a3c308b8fd974142bc7e0ba3fba2d1e0 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:10:50Z |
| publishDate | 2021-03-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-a3c308b8fd974142bc7e0ba3fba2d1e02023-11-03T14:08:20ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-03-016379679710.1080/23802359.2021.18829041882904The complete chloroplast genome sequence and phylogenetic analysis of Ilex × Koehneana ‘Wirt L. Winn’ (Aquifoliaceae)Xinran Chong0Yunlong Li1Yanwei Zhou2Hong Chen3Xinzhi Li4Naiwei Li5Xiaoqing Lu6Fan Zhang7Jiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of SciencesJiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of SciencesJiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of SciencesJiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of SciencesJiangsu Forestry BureauJiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of SciencesJiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of SciencesJiangsu Key Laboratory for the Research and Utilization of Plant Resources, Institute of Botany, Jiangsu Province and Chinese Academy of SciencesIlex × Koehneana ‘Wirt L. Winn’, an important ornamental tree, has been widely distributed in southeastern China. In this study, we assembled and characterized the complete chloroplast (cp) genome of I. Koehneana to investigate its phylogenetic relationship. The whole cp genome of I. Koehneana is 157,538 bp, which contained a large single-copy (LSC) region of 87,055 bp and a small single-copy (SSC) region of 18,429 bp, and a pair of inverted repeats (IR) of 52,054 bp. A total of 137 genes, including 90 protein-coding genes, eight rRNAs, and 39 tRNAs, were identified. Phylogenetic analysis based on 74 conserved protein-coding genes revealed that I. Koehneana is closely related to I. ‘tall boy’.http://dx.doi.org/10.1080/23802359.2021.1882904ilex × koehneana ‘wirt l. winn’chloroplast genomephylogenetic analysis |
| spellingShingle | Xinran Chong Yunlong Li Yanwei Zhou Hong Chen Xinzhi Li Naiwei Li Xiaoqing Lu Fan Zhang The complete chloroplast genome sequence and phylogenetic analysis of Ilex × Koehneana ‘Wirt L. Winn’ (Aquifoliaceae) Mitochondrial DNA. Part B. Resources ilex × koehneana ‘wirt l. winn’ chloroplast genome phylogenetic analysis |
| title | The complete chloroplast genome sequence and phylogenetic analysis of Ilex × Koehneana ‘Wirt L. Winn’ (Aquifoliaceae) |
| title_full | The complete chloroplast genome sequence and phylogenetic analysis of Ilex × Koehneana ‘Wirt L. Winn’ (Aquifoliaceae) |
| title_fullStr | The complete chloroplast genome sequence and phylogenetic analysis of Ilex × Koehneana ‘Wirt L. Winn’ (Aquifoliaceae) |
| title_full_unstemmed | The complete chloroplast genome sequence and phylogenetic analysis of Ilex × Koehneana ‘Wirt L. Winn’ (Aquifoliaceae) |
| title_short | The complete chloroplast genome sequence and phylogenetic analysis of Ilex × Koehneana ‘Wirt L. Winn’ (Aquifoliaceae) |
| title_sort | complete chloroplast genome sequence and phylogenetic analysis of ilex koehneana wirt l winn aquifoliaceae |
| topic | ilex × koehneana ‘wirt l. winn’ chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2021.1882904 |
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