Complete mitochondrial genome of Tropidophorus hangnam (Squamata: Scincidae) with phylogenetic analysis
The complete mitochondrial genome (mitogenome) of Tropidophorus hangnam was sequenced from its paratype (GenBank accession no. MN977920). It was 16,777 bp in length with a base composition of 31.99% A, 29.49% C, 14.34% G, and 24.18% T, and a GC content of 43.83%. The genome includes 13 protein-codin...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1832928 |
| _version_ | 1797639091002540032 |
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| author | Sutee Duangjai Suttikarn Srisodsuk Chantip Chuaynkern Yodchaiy Chuaynkern |
| author_facet | Sutee Duangjai Suttikarn Srisodsuk Chantip Chuaynkern Yodchaiy Chuaynkern |
| author_sort | Sutee Duangjai |
| collection | DOAJ |
| description | The complete mitochondrial genome (mitogenome) of Tropidophorus hangnam was sequenced from its paratype (GenBank accession no. MN977920). It was 16,777 bp in length with a base composition of 31.99% A, 29.49% C, 14.34% G, and 24.18% T, and a GC content of 43.83%. The genome includes 13 protein-coding genes (PCGs), 22 transfer RNA genes, 2 ribosomal RNA genes, and a control region (D loop). Most T. hangnam genes are located on the H strand, except for the ND6 gene and eight tRNA genes, which are located on the L strand. Phylogenetic analyses based on 13 PCGs indicated that T. hangnam is sister to the clade composed of the genera Scincella and Sphenomorphus. The newly sequenced T. hangnam mitogenome will provide basic data for further studies on the genetic diversity and molecular phylogenetic relationships of the genus Tropidophorus. |
| first_indexed | 2024-03-11T13:11:53Z |
| format | Article |
| id | doaj.art-a3cf058b1af742fa890bbd0ca7165918 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:11:53Z |
| publishDate | 2020-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-a3cf058b1af742fa890bbd0ca71659182023-11-03T14:08:16ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-07-01533683368410.1080/23802359.2020.18329281832928Complete mitochondrial genome of Tropidophorus hangnam (Squamata: Scincidae) with phylogenetic analysisSutee Duangjai0Suttikarn Srisodsuk1Chantip Chuaynkern2Yodchaiy Chuaynkern3Forest Biology, Faculty of Forestry, Kasetsart UniversityForest Biology, Faculty of Forestry, Kasetsart UniversityDepartment of Biology, Faculty of Science, Khon Kaen UniversityDepartment of Biology, Faculty of Science, Khon Kaen UniversityThe complete mitochondrial genome (mitogenome) of Tropidophorus hangnam was sequenced from its paratype (GenBank accession no. MN977920). It was 16,777 bp in length with a base composition of 31.99% A, 29.49% C, 14.34% G, and 24.18% T, and a GC content of 43.83%. The genome includes 13 protein-coding genes (PCGs), 22 transfer RNA genes, 2 ribosomal RNA genes, and a control region (D loop). Most T. hangnam genes are located on the H strand, except for the ND6 gene and eight tRNA genes, which are located on the L strand. Phylogenetic analyses based on 13 PCGs indicated that T. hangnam is sister to the clade composed of the genera Scincella and Sphenomorphus. The newly sequenced T. hangnam mitogenome will provide basic data for further studies on the genetic diversity and molecular phylogenetic relationships of the genus Tropidophorus.http://dx.doi.org/10.1080/23802359.2020.1832928phylogenetic relationshipmitochondrial genometropidophorus hangnam |
| spellingShingle | Sutee Duangjai Suttikarn Srisodsuk Chantip Chuaynkern Yodchaiy Chuaynkern Complete mitochondrial genome of Tropidophorus hangnam (Squamata: Scincidae) with phylogenetic analysis Mitochondrial DNA. Part B. Resources phylogenetic relationship mitochondrial genome tropidophorus hangnam |
| title | Complete mitochondrial genome of Tropidophorus hangnam (Squamata: Scincidae) with phylogenetic analysis |
| title_full | Complete mitochondrial genome of Tropidophorus hangnam (Squamata: Scincidae) with phylogenetic analysis |
| title_fullStr | Complete mitochondrial genome of Tropidophorus hangnam (Squamata: Scincidae) with phylogenetic analysis |
| title_full_unstemmed | Complete mitochondrial genome of Tropidophorus hangnam (Squamata: Scincidae) with phylogenetic analysis |
| title_short | Complete mitochondrial genome of Tropidophorus hangnam (Squamata: Scincidae) with phylogenetic analysis |
| title_sort | complete mitochondrial genome of tropidophorus hangnam squamata scincidae with phylogenetic analysis |
| topic | phylogenetic relationship mitochondrial genome tropidophorus hangnam |
| url | http://dx.doi.org/10.1080/23802359.2020.1832928 |
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