HIGH-THROUGHPUT SIMULATIONS OF PROKARYOTIC COMMUNITY EVOLUTION WITH HAPLOID EVOLUTIONARY CONSTRUCTOR
The results of the development of a high-throughput version of the software package Haploid Evolutionary Constructor (HEC), available at http://evol-constructor.bionet.nsc.ru, are presented. The software is used to simulate the functioning and evolution of prokaryotic communities. A parallel version...
| Main Authors: | , , |
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| Format: | Article |
| Language: | English |
| Published: |
Siberian Branch of the Russian Academy of Sciences, Federal Research Center Institute of Cytology and Genetics, The Vavilov Society of Geneticists and Breeders
2014-12-01
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| Series: | Вавиловский журнал генетики и селекции |
| Subjects: | |
| Online Access: | https://vavilov.elpub.ru/jour/article/view/80 |
| _version_ | 1797214239745638400 |
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| author | Z. S. Mustafin Yu. G. Matushkin S. A. Lashin |
| author_facet | Z. S. Mustafin Yu. G. Matushkin S. A. Lashin |
| author_sort | Z. S. Mustafin |
| collection | DOAJ |
| description | The results of the development of a high-throughput version of the software package Haploid Evolutionary Constructor (HEC), available at http://evol-constructor.bionet.nsc.ru, are presented. The software is used to simulate the functioning and evolution of prokaryotic communities. A parallel version of the software package was created using the MPI technology. The test was performed on a cluster of the Bioinformatics shared access center. The acceleration obtained was almost linear. The simulation time of complex bacterial communities was reduced from dozens of hours to several minutes. |
| first_indexed | 2024-03-07T16:08:21Z |
| format | Article |
| id | doaj.art-a436ed78cf7e4fcba78fea24262058d2 |
| institution | Directory Open Access Journal |
| issn | 2500-3259 |
| language | English |
| last_indexed | 2024-04-24T11:11:01Z |
| publishDate | 2014-12-01 |
| publisher | Siberian Branch of the Russian Academy of Sciences, Federal Research Center Institute of Cytology and Genetics, The Vavilov Society of Geneticists and Breeders |
| record_format | Article |
| series | Вавиловский журнал генетики и селекции |
| spelling | doaj.art-a436ed78cf7e4fcba78fea24262058d22024-04-11T15:30:52ZengSiberian Branch of the Russian Academy of Sciences, Federal Research Center Institute of Cytology and Genetics, The Vavilov Society of Geneticists and BreedersВавиловский журнал генетики и селекции2500-32592014-12-01164/182582964HIGH-THROUGHPUT SIMULATIONS OF PROKARYOTIC COMMUNITY EVOLUTION WITH HAPLOID EVOLUTIONARY CONSTRUCTORZ. S. Mustafin0Yu. G. Matushkin1S. A. Lashin2Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia Novosibirsk National Research State University, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia Novosibirsk National Research State University, Novosibirsk, RussiaInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia Novosibirsk National Research State University, Novosibirsk, RussiaThe results of the development of a high-throughput version of the software package Haploid Evolutionary Constructor (HEC), available at http://evol-constructor.bionet.nsc.ru, are presented. The software is used to simulate the functioning and evolution of prokaryotic communities. A parallel version of the software package was created using the MPI technology. The test was performed on a cluster of the Bioinformatics shared access center. The acceleration obtained was almost linear. The simulation time of complex bacterial communities was reduced from dozens of hours to several minutes.https://vavilov.elpub.ru/jour/article/view/80microbial communitiesoptimizationparallel computingmodelingevolution |
| spellingShingle | Z. S. Mustafin Yu. G. Matushkin S. A. Lashin HIGH-THROUGHPUT SIMULATIONS OF PROKARYOTIC COMMUNITY EVOLUTION WITH HAPLOID EVOLUTIONARY CONSTRUCTOR Вавиловский журнал генетики и селекции microbial communities optimization parallel computing modeling evolution |
| title | HIGH-THROUGHPUT SIMULATIONS OF PROKARYOTIC COMMUNITY EVOLUTION WITH HAPLOID EVOLUTIONARY CONSTRUCTOR |
| title_full | HIGH-THROUGHPUT SIMULATIONS OF PROKARYOTIC COMMUNITY EVOLUTION WITH HAPLOID EVOLUTIONARY CONSTRUCTOR |
| title_fullStr | HIGH-THROUGHPUT SIMULATIONS OF PROKARYOTIC COMMUNITY EVOLUTION WITH HAPLOID EVOLUTIONARY CONSTRUCTOR |
| title_full_unstemmed | HIGH-THROUGHPUT SIMULATIONS OF PROKARYOTIC COMMUNITY EVOLUTION WITH HAPLOID EVOLUTIONARY CONSTRUCTOR |
| title_short | HIGH-THROUGHPUT SIMULATIONS OF PROKARYOTIC COMMUNITY EVOLUTION WITH HAPLOID EVOLUTIONARY CONSTRUCTOR |
| title_sort | high throughput simulations of prokaryotic community evolution with haploid evolutionary constructor |
| topic | microbial communities optimization parallel computing modeling evolution |
| url | https://vavilov.elpub.ru/jour/article/view/80 |
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