Comparative Evaluation of LAMP and Nested PCR for the Rapid Diagnosis of Mycobacterium marinum Infection
Yumiao Feng,1,2,* Miaomiao Wang,2,3,* Haiqin Jiang,2 Ying Shi,2 Wenyue Zhang,2 Hongsheng Wang2 1Department of Dermatology, the Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou, People’s Republic of China; 2Department of Mycobacterium, Jiangsu Key Laboratory of Molecul...
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| Format: | Article |
| Language: | English |
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Dove Medical Press
2023-03-01
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| Series: | Infection and Drug Resistance |
| Subjects: | |
| Online Access: | https://www.dovepress.com/comparative-evaluation-of-lamp-and-nested-pcr-for-the-rapid-diagnosis--peer-reviewed-fulltext-article-IDR |
| _version_ | 1797866245959188480 |
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| author | Feng Y Wang M Jiang H Shi Y Zhang W Wang H |
| author_facet | Feng Y Wang M Jiang H Shi Y Zhang W Wang H |
| author_sort | Feng Y |
| collection | DOAJ |
| description | Yumiao Feng,1,2,* Miaomiao Wang,2,3,* Haiqin Jiang,2 Ying Shi,2 Wenyue Zhang,2 Hongsheng Wang2 1Department of Dermatology, the Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou, People’s Republic of China; 2Department of Mycobacterium, Jiangsu Key Laboratory of Molecular Biology for Skin Diseases and STIS, Institute of Dermatology & Hospital of Skin Diseases, Chinese Academy of Medical Sciences & Peking Union Medical College, Nanjing, People’s Republic of China; 3Department of Dermatology, the First Affiliated Hospital of Soochow University, Suzhou, People’s Republic of China*These authors contributed equally to this workCorrespondence: Hongsheng Wang, Institute of Dermatology, Chinese Academy of Medical Sciences & Peking Union Medical College, No. 12 Jiangwangmiao Street, Nanjing, People’s Republic of China, Tel +86 025 8547 8953, Email whs33@vip.sina.comPurpose: Culture of Mycobacterium marinum is very time-consuming, taking several weeks to produce positive results. Seeking rapid and sensitive diagnostic methods for diagnosis can greatly improve patient treatment. Our study aimed to compare the rapid diagnostic abilities of polymerase chain reaction (PCR), nested PCR and loop mediated isothermal amplification (LAMP) of detecting M. marinum in skin samples from patients with M. marinum infection.Methods: A total of 6 M. marinum strains and 6 skin samples with definite diagnosis of M. marinum infection were included in the study. We optimized LAMP performance for detection of M. marinum genomic DNA and confirmed the specificity of the primers. Then, the sensitivity of the LAMP and nested PCR assays were assessed by M. marinum strains and clinical samples.Results: Nested PCR was 10-fold more sensitive than the LAMP assay by serial dilution of M. marinum DNA. PCR positive samples were all positive by LAMP detection of 6 clinical M. marinum strains. Out of 6 clinical skin specimens confirmed as M. marinum infection, 0 (0%), 3 (50%), 3 (50%), and 4 (66.6%) were positive by PCR, nested PCR, LAMP and culture. The LAMP shared the same sensitivity than nested PCR in M. marinum strains and clinical samples, but it was easy to perform and faster than nested PCR assay.Conclusion: Compared with conventional PCR, LAMP and nested PCR are more sensitive and have a higher detection rate of M. marinum in clinical skin specimens. The LAMP assay proved to be more suitable for rapid diagnosis of M. marinum infection in a shorter time, especially in resource-limited settings.Keywords: Mycobacterium marinum, diagnosis, PCR, nested PCR, LAMP |
| first_indexed | 2024-04-09T23:20:59Z |
| format | Article |
| id | doaj.art-a43ae0fa049741f5ac6e1986f295ca06 |
| institution | Directory Open Access Journal |
| issn | 1178-6973 |
| language | English |
| last_indexed | 2024-04-09T23:20:59Z |
| publishDate | 2023-03-01 |
| publisher | Dove Medical Press |
| record_format | Article |
| series | Infection and Drug Resistance |
| spelling | doaj.art-a43ae0fa049741f5ac6e1986f295ca062023-03-21T18:11:20ZengDove Medical PressInfection and Drug Resistance1178-69732023-03-01Volume 161601160982406Comparative Evaluation of LAMP and Nested PCR for the Rapid Diagnosis of Mycobacterium marinum InfectionFeng YWang MJiang HShi YZhang WWang HYumiao Feng,1,2,* Miaomiao Wang,2,3,* Haiqin Jiang,2 Ying Shi,2 Wenyue Zhang,2 Hongsheng Wang2 1Department of Dermatology, the Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou, People’s Republic of China; 2Department of Mycobacterium, Jiangsu Key Laboratory of Molecular Biology for Skin Diseases and STIS, Institute of Dermatology & Hospital of Skin Diseases, Chinese Academy of Medical Sciences & Peking Union Medical College, Nanjing, People’s Republic of China; 3Department of Dermatology, the First Affiliated Hospital of Soochow University, Suzhou, People’s Republic of China*These authors contributed equally to this workCorrespondence: Hongsheng Wang, Institute of Dermatology, Chinese Academy of Medical Sciences & Peking Union Medical College, No. 12 Jiangwangmiao Street, Nanjing, People’s Republic of China, Tel +86 025 8547 8953, Email whs33@vip.sina.comPurpose: Culture of Mycobacterium marinum is very time-consuming, taking several weeks to produce positive results. Seeking rapid and sensitive diagnostic methods for diagnosis can greatly improve patient treatment. Our study aimed to compare the rapid diagnostic abilities of polymerase chain reaction (PCR), nested PCR and loop mediated isothermal amplification (LAMP) of detecting M. marinum in skin samples from patients with M. marinum infection.Methods: A total of 6 M. marinum strains and 6 skin samples with definite diagnosis of M. marinum infection were included in the study. We optimized LAMP performance for detection of M. marinum genomic DNA and confirmed the specificity of the primers. Then, the sensitivity of the LAMP and nested PCR assays were assessed by M. marinum strains and clinical samples.Results: Nested PCR was 10-fold more sensitive than the LAMP assay by serial dilution of M. marinum DNA. PCR positive samples were all positive by LAMP detection of 6 clinical M. marinum strains. Out of 6 clinical skin specimens confirmed as M. marinum infection, 0 (0%), 3 (50%), 3 (50%), and 4 (66.6%) were positive by PCR, nested PCR, LAMP and culture. The LAMP shared the same sensitivity than nested PCR in M. marinum strains and clinical samples, but it was easy to perform and faster than nested PCR assay.Conclusion: Compared with conventional PCR, LAMP and nested PCR are more sensitive and have a higher detection rate of M. marinum in clinical skin specimens. The LAMP assay proved to be more suitable for rapid diagnosis of M. marinum infection in a shorter time, especially in resource-limited settings.Keywords: Mycobacterium marinum, diagnosis, PCR, nested PCR, LAMPhttps://www.dovepress.com/comparative-evaluation-of-lamp-and-nested-pcr-for-the-rapid-diagnosis--peer-reviewed-fulltext-article-IDRmycobacterium marinumdiagnosispcrnested pcrlamp |
| spellingShingle | Feng Y Wang M Jiang H Shi Y Zhang W Wang H Comparative Evaluation of LAMP and Nested PCR for the Rapid Diagnosis of Mycobacterium marinum Infection Infection and Drug Resistance mycobacterium marinum diagnosis pcr nested pcr lamp |
| title | Comparative Evaluation of LAMP and Nested PCR for the Rapid Diagnosis of Mycobacterium marinum Infection |
| title_full | Comparative Evaluation of LAMP and Nested PCR for the Rapid Diagnosis of Mycobacterium marinum Infection |
| title_fullStr | Comparative Evaluation of LAMP and Nested PCR for the Rapid Diagnosis of Mycobacterium marinum Infection |
| title_full_unstemmed | Comparative Evaluation of LAMP and Nested PCR for the Rapid Diagnosis of Mycobacterium marinum Infection |
| title_short | Comparative Evaluation of LAMP and Nested PCR for the Rapid Diagnosis of Mycobacterium marinum Infection |
| title_sort | comparative evaluation of lamp and nested pcr for the rapid diagnosis of mycobacterium marinum infection |
| topic | mycobacterium marinum diagnosis pcr nested pcr lamp |
| url | https://www.dovepress.com/comparative-evaluation-of-lamp-and-nested-pcr-for-the-rapid-diagnosis--peer-reviewed-fulltext-article-IDR |
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