Phylogenetic analysis of the complete mitochondrial genome of Jaydia carinatus (Kurtiformes; Apogonidae)
The complete mitogenome of Jaydia carinatus was sequenced, that was a closed double-stranded circular molecule of 16,455 bp. We analyzed the main features of this sequence in terms of the genome organization, gene arrangement and codon usage. The overall base composition included A(27.6%), T(25.7%),...
| Main Authors: | , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-04-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1721360 |
| _version_ | 1827773069620412416 |
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| author | Lingmin Xia Jianshe Zhang |
| author_facet | Lingmin Xia Jianshe Zhang |
| author_sort | Lingmin Xia |
| collection | DOAJ |
| description | The complete mitogenome of Jaydia carinatus was sequenced, that was a closed double-stranded circular molecule of 16,455 bp. We analyzed the main features of this sequence in terms of the genome organization, gene arrangement and codon usage. The overall base composition included A(27.6%), T(25.7%), C(29.6%) and G(17.1%). Moreover, the 13 protein-coding genes (PCGs) encoded 3821 amino acids in total, 12 of which used the initiation codon ATG except COI used GTG; most of them had a complete stop codon, whereas Cytb ended with the incomplete stop codon T. The phylogenetic tree was conducted to provide relationship within Kurtiformes based on the Neighbor Joining method and the NJ tree demonstrated this species had a closest relationship with Jaydia lineata, which could be a useful basis for propagation of this species. |
| first_indexed | 2024-03-11T13:16:46Z |
| format | Article |
| id | doaj.art-a5b094779b1544869b1bbacb053251e4 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:16:46Z |
| publishDate | 2020-04-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-a5b094779b1544869b1bbacb053251e42023-11-03T11:00:22ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-04-01521136113710.1080/23802359.2020.17213601721360Phylogenetic analysis of the complete mitochondrial genome of Jaydia carinatus (Kurtiformes; Apogonidae)Lingmin Xia0Jianshe Zhang1Marine Fisheries Research Institute of Zhejiang ProvinceZhejiang Ocean UniversityThe complete mitogenome of Jaydia carinatus was sequenced, that was a closed double-stranded circular molecule of 16,455 bp. We analyzed the main features of this sequence in terms of the genome organization, gene arrangement and codon usage. The overall base composition included A(27.6%), T(25.7%), C(29.6%) and G(17.1%). Moreover, the 13 protein-coding genes (PCGs) encoded 3821 amino acids in total, 12 of which used the initiation codon ATG except COI used GTG; most of them had a complete stop codon, whereas Cytb ended with the incomplete stop codon T. The phylogenetic tree was conducted to provide relationship within Kurtiformes based on the Neighbor Joining method and the NJ tree demonstrated this species had a closest relationship with Jaydia lineata, which could be a useful basis for propagation of this species.http://dx.doi.org/10.1080/23802359.2020.1721360jaydia carinatusmitogenomephylogenetic tree |
| spellingShingle | Lingmin Xia Jianshe Zhang Phylogenetic analysis of the complete mitochondrial genome of Jaydia carinatus (Kurtiformes; Apogonidae) Mitochondrial DNA. Part B. Resources jaydia carinatus mitogenome phylogenetic tree |
| title | Phylogenetic analysis of the complete mitochondrial genome of Jaydia carinatus (Kurtiformes; Apogonidae) |
| title_full | Phylogenetic analysis of the complete mitochondrial genome of Jaydia carinatus (Kurtiformes; Apogonidae) |
| title_fullStr | Phylogenetic analysis of the complete mitochondrial genome of Jaydia carinatus (Kurtiformes; Apogonidae) |
| title_full_unstemmed | Phylogenetic analysis of the complete mitochondrial genome of Jaydia carinatus (Kurtiformes; Apogonidae) |
| title_short | Phylogenetic analysis of the complete mitochondrial genome of Jaydia carinatus (Kurtiformes; Apogonidae) |
| title_sort | phylogenetic analysis of the complete mitochondrial genome of jaydia carinatus kurtiformes apogonidae |
| topic | jaydia carinatus mitogenome phylogenetic tree |
| url | http://dx.doi.org/10.1080/23802359.2020.1721360 |
| work_keys_str_mv | AT lingminxia phylogeneticanalysisofthecompletemitochondrialgenomeofjaydiacarinatuskurtiformesapogonidae AT jianshezhang phylogeneticanalysisofthecompletemitochondrialgenomeofjaydiacarinatuskurtiformesapogonidae |