The complete chloroplast genome of a rare species Capparis versicolor Griff. (Rhoeadales: Capparaceae)
Capparis versicolor Griff. is a rare and threatened medicinal plant in South China. Chloroplast (cp)-derived markers have been widely used to study evolutionary relationships of many species. In this study, the complete cp genome of C. versicolor was assembled based on next-generation sequencing. Th...
| Main Authors: | , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1553508 |
| _version_ | 1797640549776228352 |
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| author | Zhenxin Ren Junqi Niu Zhaozhan Mo |
| author_facet | Zhenxin Ren Junqi Niu Zhaozhan Mo |
| author_sort | Zhenxin Ren |
| collection | DOAJ |
| description | Capparis versicolor Griff. is a rare and threatened medicinal plant in South China. Chloroplast (cp)-derived markers have been widely used to study evolutionary relationships of many species. In this study, the complete cp genome of C. versicolor was assembled based on next-generation sequencing. The whole genome was 155,051 bp in length, consisting of a pair of inverted repeats, large single copy region, and a small single copy region. The cp genome contained 123 genes, including 83 protein-coding genes, 4 rRNA genes, and 36 trRNA genes. The overall GC content of the whole cp genome was 36.38%. A neighbour-joining phylogenetic analysis demonstrated that C. versicolor is clustered together with Pachycladon enysii. |
| first_indexed | 2024-03-11T13:33:43Z |
| format | Article |
| id | doaj.art-a5c4967dc6fe4feca11ea6f409b21d8b |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:33:43Z |
| publishDate | 2019-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-a5c4967dc6fe4feca11ea6f409b21d8b2023-11-02T16:07:24ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-01-014152752910.1080/23802359.2018.15535081553508The complete chloroplast genome of a rare species Capparis versicolor Griff. (Rhoeadales: Capparaceae)Zhenxin Ren0Junqi Niu1Zhaozhan Mo2Yulin Normal University, YulinYulin Normal University, YulinYulin Normal University, YulinCapparis versicolor Griff. is a rare and threatened medicinal plant in South China. Chloroplast (cp)-derived markers have been widely used to study evolutionary relationships of many species. In this study, the complete cp genome of C. versicolor was assembled based on next-generation sequencing. The whole genome was 155,051 bp in length, consisting of a pair of inverted repeats, large single copy region, and a small single copy region. The cp genome contained 123 genes, including 83 protein-coding genes, 4 rRNA genes, and 36 trRNA genes. The overall GC content of the whole cp genome was 36.38%. A neighbour-joining phylogenetic analysis demonstrated that C. versicolor is clustered together with Pachycladon enysii.http://dx.doi.org/10.1080/23802359.2018.1553508capparis versicolornext-generation sequencingchloroplast genomephylogenetic analysis |
| spellingShingle | Zhenxin Ren Junqi Niu Zhaozhan Mo The complete chloroplast genome of a rare species Capparis versicolor Griff. (Rhoeadales: Capparaceae) Mitochondrial DNA. Part B. Resources capparis versicolor next-generation sequencing chloroplast genome phylogenetic analysis |
| title | The complete chloroplast genome of a rare species Capparis versicolor Griff. (Rhoeadales: Capparaceae) |
| title_full | The complete chloroplast genome of a rare species Capparis versicolor Griff. (Rhoeadales: Capparaceae) |
| title_fullStr | The complete chloroplast genome of a rare species Capparis versicolor Griff. (Rhoeadales: Capparaceae) |
| title_full_unstemmed | The complete chloroplast genome of a rare species Capparis versicolor Griff. (Rhoeadales: Capparaceae) |
| title_short | The complete chloroplast genome of a rare species Capparis versicolor Griff. (Rhoeadales: Capparaceae) |
| title_sort | complete chloroplast genome of a rare species capparis versicolor griff rhoeadales capparaceae |
| topic | capparis versicolor next-generation sequencing chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2018.1553508 |
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