Genome Sequence Resource of Phytophthora vignae, the Causal Agent of Stem and Root Rot of Cowpea
The causal agent of stem and root rot of cowpea, Phytophthora vignae, is a widely distributed species of the Phytophthora genus. Here, we generate a high-quality complete genome assembly of P. vignae PSY2020 (89.39 Mb, N50 2.99 Mb) from China, using Oxford Nanopore Technologies (ONT) sequencing. The...
| Main Authors: | , , , , , , , , |
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| Format: | Article |
| Language: | English |
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The American Phytopathological Society
2021-07-01
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| Series: | Molecular Plant-Microbe Interactions |
| Online Access: | https://apsjournals.apsnet.org/doi/10.1094/MPMI-12-20-0353-A |
| _version_ | 1811261315030712320 |
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| author | Chengdong Yang Lianyu Lin Jiandong Bao Zhixin Wang Zhiting Li Hengyuan Guo Lin Lv Dan Yu Qinghe Chen |
| author_facet | Chengdong Yang Lianyu Lin Jiandong Bao Zhixin Wang Zhiting Li Hengyuan Guo Lin Lv Dan Yu Qinghe Chen |
| author_sort | Chengdong Yang |
| collection | DOAJ |
| description | The causal agent of stem and root rot of cowpea, Phytophthora vignae, is a widely distributed species of the Phytophthora genus. Here, we generate a high-quality complete genome assembly of P. vignae PSY2020 (89.39 Mb, N50 2.99 Mb) from China, using Oxford Nanopore Technologies (ONT) sequencing. The genome assembly completeness as evaluated by benchmarking universal single-copy orthologs was 94.51% at the eukaryote level. We identified 42.54% as repeat sequences and a total of 20,536 protein-encoding genes, of which 15,184 genes could be annotated. And we also identified 924 candidate RXLR effectors in the genome assembly. The described genome sequence will provide a valuable resource for better understanding of pathogenicity mechanisms of P. vignae and help in uncovering phylogenetical classification of Phytophthora species.[Graphic: see text] The author(s) have dedicated the work to the public domain under the Creative Commons CC0 “No Rights Reserved” license by waiving all of his or her rights to the work worldwide under copyright law, including all related and neighboring rights, to the extent allowed by law, 2021. |
| first_indexed | 2024-04-12T19:01:18Z |
| format | Article |
| id | doaj.art-a698dd233a9949bbb2af0eba4e1c7799 |
| institution | Directory Open Access Journal |
| issn | 0894-0282 1943-7706 |
| language | English |
| last_indexed | 2024-04-12T19:01:18Z |
| publishDate | 2021-07-01 |
| publisher | The American Phytopathological Society |
| record_format | Article |
| series | Molecular Plant-Microbe Interactions |
| spelling | doaj.art-a698dd233a9949bbb2af0eba4e1c77992022-12-22T03:20:08ZengThe American Phytopathological SocietyMolecular Plant-Microbe Interactions0894-02821943-77062021-07-0134786286510.1094/MPMI-12-20-0353-AGenome Sequence Resource of Phytophthora vignae, the Causal Agent of Stem and Root Rot of CowpeaChengdong Yang0Lianyu Lin1Jiandong Bao2Zhixin Wang3Zhiting Li4Hengyuan Guo5Lin Lv6Dan Yu7Qinghe Chen8Key Laboratory of Green Prevention and Control of Tropical Plant Diseases and Pests, Ministry of Education, College of Plant Protection, Hainan University, Haikou 570228, ChinaFujian University Key Laboratory for Plant-Microbe Interaction, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, ChinaFujian University Key Laboratory for Plant-Microbe Interaction, College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, ChinaKey Laboratory of Green Prevention and Control of Tropical Plant Diseases and Pests, Ministry of Education, College of Plant Protection, Hainan University, Haikou 570228, ChinaKey Laboratory of Green Prevention and Control of Tropical Plant Diseases and Pests, Ministry of Education, College of Plant Protection, Hainan University, Haikou 570228, ChinaKey Laboratory of Green Prevention and Control of Tropical Plant Diseases and Pests, Ministry of Education, College of Plant Protection, Hainan University, Haikou 570228, ChinaKey Laboratory of Green Prevention and Control of Tropical Plant Diseases and Pests, Ministry of Education, College of Plant Protection, Hainan University, Haikou 570228, ChinaKey Laboratory of Green Prevention and Control of Tropical Plant Diseases and Pests, Ministry of Education, College of Plant Protection, Hainan University, Haikou 570228, ChinaKey Laboratory of Green Prevention and Control of Tropical Plant Diseases and Pests, Ministry of Education, College of Plant Protection, Hainan University, Haikou 570228, ChinaThe causal agent of stem and root rot of cowpea, Phytophthora vignae, is a widely distributed species of the Phytophthora genus. Here, we generate a high-quality complete genome assembly of P. vignae PSY2020 (89.39 Mb, N50 2.99 Mb) from China, using Oxford Nanopore Technologies (ONT) sequencing. The genome assembly completeness as evaluated by benchmarking universal single-copy orthologs was 94.51% at the eukaryote level. We identified 42.54% as repeat sequences and a total of 20,536 protein-encoding genes, of which 15,184 genes could be annotated. And we also identified 924 candidate RXLR effectors in the genome assembly. The described genome sequence will provide a valuable resource for better understanding of pathogenicity mechanisms of P. vignae and help in uncovering phylogenetical classification of Phytophthora species.[Graphic: see text] The author(s) have dedicated the work to the public domain under the Creative Commons CC0 “No Rights Reserved” license by waiving all of his or her rights to the work worldwide under copyright law, including all related and neighboring rights, to the extent allowed by law, 2021.https://apsjournals.apsnet.org/doi/10.1094/MPMI-12-20-0353-A |
| spellingShingle | Chengdong Yang Lianyu Lin Jiandong Bao Zhixin Wang Zhiting Li Hengyuan Guo Lin Lv Dan Yu Qinghe Chen Genome Sequence Resource of Phytophthora vignae, the Causal Agent of Stem and Root Rot of Cowpea Molecular Plant-Microbe Interactions |
| title | Genome Sequence Resource of Phytophthora vignae, the Causal Agent of Stem and Root Rot of Cowpea |
| title_full | Genome Sequence Resource of Phytophthora vignae, the Causal Agent of Stem and Root Rot of Cowpea |
| title_fullStr | Genome Sequence Resource of Phytophthora vignae, the Causal Agent of Stem and Root Rot of Cowpea |
| title_full_unstemmed | Genome Sequence Resource of Phytophthora vignae, the Causal Agent of Stem and Root Rot of Cowpea |
| title_short | Genome Sequence Resource of Phytophthora vignae, the Causal Agent of Stem and Root Rot of Cowpea |
| title_sort | genome sequence resource of phytophthora vignae the causal agent of stem and root rot of cowpea |
| url | https://apsjournals.apsnet.org/doi/10.1094/MPMI-12-20-0353-A |
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