The complete chloroplast genome sequence of Gentiana triflora and comparative analysis with its congeneric species
Gentiana triflora is an important medicinal plant in China with economic and medicinal value. Here, we report the complete chloroplastsequences of G. trifloral. The cp genome of G. triflora of 149, 125 bp contains 130 unique genes, including 85 protein-coding genes,8 rRNA genes, and 37 tRNA genes....
| Main Authors: | , , , , , , |
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| Format: | Article |
| Language: | English |
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Julius Kühn-Institut
2022-05-01
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| Series: | Journal of Applied Botany and Food Quality |
| Online Access: | https://ojs.openagrar.de/index.php/JABFQ/article/view/16421 |
| _version_ | 1811306699584176128 |
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| author | Xinke Zhang Yujing Miao Xiao Sun Yuan Jiang Tiexin Zeng Yan Zheng LinFang Huang |
| author_facet | Xinke Zhang Yujing Miao Xiao Sun Yuan Jiang Tiexin Zeng Yan Zheng LinFang Huang |
| author_sort | Xinke Zhang |
| collection | DOAJ |
| description |
Gentiana triflora is an important medicinal plant in China with economic and medicinal value. Here, we report the complete chloroplastsequences of G. trifloral. The cp genome of G. triflora of 149, 125 bp contains 130 unique genes, including 85 protein-coding genes,8 rRNA genes, and 37 tRNA genes. The analysis of repeat showed that palindromic had the highest frequency. Besides, a total numberof 45 SSR were identified, most of which were mononucleotide adenine-thymine. Comparative genome analysis of Gentiana speciesrevealed that the pair of the inverted repeat was more conserved than the single-copy region. This analysis resulted in identification of 8 hypervariable regions (trnH-GUG, trnG-UCC-intron, atpI, trnD-GUC, trnL-UAA, rpl32-trnL-UAG, petA and ycf1). Phylogenetic analysis revealed that G. triflora was most closely related to Gentiana manshurica. In conclusion, this study enriched the genomic resources of the Gentiana genus and provided a basis for evolution and phylogeny analyses.
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| first_indexed | 2024-04-13T08:50:09Z |
| format | Article |
| id | doaj.art-a6c1ce10ff4945569dbfb5f2ee726154 |
| institution | Directory Open Access Journal |
| issn | 1613-9216 1439-040X |
| language | English |
| last_indexed | 2024-04-13T08:50:09Z |
| publishDate | 2022-05-01 |
| publisher | Julius Kühn-Institut |
| record_format | Article |
| series | Journal of Applied Botany and Food Quality |
| spelling | doaj.art-a6c1ce10ff4945569dbfb5f2ee7261542022-12-22T02:53:31ZengJulius Kühn-InstitutJournal of Applied Botany and Food Quality1613-92161439-040X2022-05-019510.5073/JABFQ.2022.095.007The complete chloroplast genome sequence of Gentiana triflora and comparative analysis with its congeneric speciesXinke Zhang0Yujing Miao1Xiao Sun2Yuan Jiang3Tiexin Zeng4Yan Zheng5LinFang Huang6Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences, Beijing, ChinaInstitute of Medicinal Plant Development, Chinese Academy of Medical Sciences, Beijing, ChinaInstitute of Medicinal Plant Development, Chinese Academy of Medical Sciences, Beijing, ChinaInstitute of Medicinal Plant Development, Chinese Academy of Medical Sciences, Beijing, ChinaInstitute of Medicinal Plant Development, Chinese Academy of Medical Sciences, Beijing, ChinaInstitute of Medicinal Plant Development, Chinese Academy of Medical Sciences, Beijing, ChinaInstitute of Medicinal Plant Development, Chinese Academy of Medical Sciences, Beijing, China Gentiana triflora is an important medicinal plant in China with economic and medicinal value. Here, we report the complete chloroplastsequences of G. trifloral. The cp genome of G. triflora of 149, 125 bp contains 130 unique genes, including 85 protein-coding genes,8 rRNA genes, and 37 tRNA genes. The analysis of repeat showed that palindromic had the highest frequency. Besides, a total numberof 45 SSR were identified, most of which were mononucleotide adenine-thymine. Comparative genome analysis of Gentiana speciesrevealed that the pair of the inverted repeat was more conserved than the single-copy region. This analysis resulted in identification of 8 hypervariable regions (trnH-GUG, trnG-UCC-intron, atpI, trnD-GUC, trnL-UAA, rpl32-trnL-UAG, petA and ycf1). Phylogenetic analysis revealed that G. triflora was most closely related to Gentiana manshurica. In conclusion, this study enriched the genomic resources of the Gentiana genus and provided a basis for evolution and phylogeny analyses. https://ojs.openagrar.de/index.php/JABFQ/article/view/16421 |
| spellingShingle | Xinke Zhang Yujing Miao Xiao Sun Yuan Jiang Tiexin Zeng Yan Zheng LinFang Huang The complete chloroplast genome sequence of Gentiana triflora and comparative analysis with its congeneric species Journal of Applied Botany and Food Quality |
| title | The complete chloroplast genome sequence of Gentiana triflora and comparative analysis with its congeneric species |
| title_full | The complete chloroplast genome sequence of Gentiana triflora and comparative analysis with its congeneric species |
| title_fullStr | The complete chloroplast genome sequence of Gentiana triflora and comparative analysis with its congeneric species |
| title_full_unstemmed | The complete chloroplast genome sequence of Gentiana triflora and comparative analysis with its congeneric species |
| title_short | The complete chloroplast genome sequence of Gentiana triflora and comparative analysis with its congeneric species |
| title_sort | complete chloroplast genome sequence of gentiana triflora and comparative analysis with its congeneric species |
| url | https://ojs.openagrar.de/index.php/JABFQ/article/view/16421 |
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