The complete chloroplast genome sequence of Ligustrum foliosum (Oleaceae), a species endemic to the Ulleungdo Island, Korea
We determined the complete chloroplast genome sequence of Ligustrum foliosum Nakai, an endemic species of Korea. The plastome was 165,731 bp long, with a large single copy (90,009 bp), a small single copy (11,448 bp), and a pair of inverted repeats (32,137 bp). Moreover, 113 genes were encoded, incl...
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| Format: | Article |
| Language: | English |
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Elsevier
2023-06-01
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| Series: | Journal of Asia-Pacific Biodiversity |
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| Online Access: | http://www.sciencedirect.com/science/article/pii/S2287884X22001273 |
| _version_ | 1797818658928459776 |
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| author | Ju Eun Jang Sang-Chul Kim Ji Eun Kim Young-Ho Ha Tae-Hee Kim Hee-Young Gil |
| author_facet | Ju Eun Jang Sang-Chul Kim Ji Eun Kim Young-Ho Ha Tae-Hee Kim Hee-Young Gil |
| author_sort | Ju Eun Jang |
| collection | DOAJ |
| description | We determined the complete chloroplast genome sequence of Ligustrum foliosum Nakai, an endemic species of Korea. The plastome was 165,731 bp long, with a large single copy (90,009 bp), a small single copy (11,448 bp), and a pair of inverted repeats (32,137 bp). Moreover, 113 genes were encoded, including 79 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. Phylogenetic analysis of 18 species using concatenated 78 protein-coding genes (excluding one pseudogene) revealed that L. foliosum is most closely related to L. quihoui, having strong bootstrap values. This study is the first report of the chloroplast genome of L. foliosum and provides important information for future phylogenetic studies on Ligustrum and distinguishing closely related species of Ligustrum. |
| first_indexed | 2024-03-13T09:12:24Z |
| format | Article |
| id | doaj.art-a6db0af020a5436ca06bfeba476ea03c |
| institution | Directory Open Access Journal |
| issn | 2287-884X |
| language | English |
| last_indexed | 2024-03-13T09:12:24Z |
| publishDate | 2023-06-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Journal of Asia-Pacific Biodiversity |
| spelling | doaj.art-a6db0af020a5436ca06bfeba476ea03c2023-05-27T04:25:31ZengElsevierJournal of Asia-Pacific Biodiversity2287-884X2023-06-01162287290The complete chloroplast genome sequence of Ligustrum foliosum (Oleaceae), a species endemic to the Ulleungdo Island, KoreaJu Eun Jang0Sang-Chul Kim1Ji Eun Kim2Young-Ho Ha3Tae-Hee Kim4Hee-Young Gil5Division of Forest Biodiversity, Korea National Arboretum, Pocheon 11186, South KoreaDivision of Forest Biodiversity, Korea National Arboretum, Pocheon 11186, South KoreaDivision of Forest Biodiversity, Korea National Arboretum, Pocheon 11186, South KoreaDivision of Forest Biodiversity, Korea National Arboretum, Pocheon 11186, South KoreaDivision of Forest Biodiversity, Korea National Arboretum, Pocheon 11186, South KoreaCorresponding author. Tel.: +82 31 540 8812; Division of Forest Biodiversity, Korea National Arboretum, Pocheon 11186, South KoreaWe determined the complete chloroplast genome sequence of Ligustrum foliosum Nakai, an endemic species of Korea. The plastome was 165,731 bp long, with a large single copy (90,009 bp), a small single copy (11,448 bp), and a pair of inverted repeats (32,137 bp). Moreover, 113 genes were encoded, including 79 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. Phylogenetic analysis of 18 species using concatenated 78 protein-coding genes (excluding one pseudogene) revealed that L. foliosum is most closely related to L. quihoui, having strong bootstrap values. This study is the first report of the chloroplast genome of L. foliosum and provides important information for future phylogenetic studies on Ligustrum and distinguishing closely related species of Ligustrum.http://www.sciencedirect.com/science/article/pii/S2287884X22001273chloroplast genomeendemic speciesLigustrum foliosumOleaceaephylogenetic analysis |
| spellingShingle | Ju Eun Jang Sang-Chul Kim Ji Eun Kim Young-Ho Ha Tae-Hee Kim Hee-Young Gil The complete chloroplast genome sequence of Ligustrum foliosum (Oleaceae), a species endemic to the Ulleungdo Island, Korea Journal of Asia-Pacific Biodiversity chloroplast genome endemic species Ligustrum foliosum Oleaceae phylogenetic analysis |
| title | The complete chloroplast genome sequence of Ligustrum foliosum (Oleaceae), a species endemic to the Ulleungdo Island, Korea |
| title_full | The complete chloroplast genome sequence of Ligustrum foliosum (Oleaceae), a species endemic to the Ulleungdo Island, Korea |
| title_fullStr | The complete chloroplast genome sequence of Ligustrum foliosum (Oleaceae), a species endemic to the Ulleungdo Island, Korea |
| title_full_unstemmed | The complete chloroplast genome sequence of Ligustrum foliosum (Oleaceae), a species endemic to the Ulleungdo Island, Korea |
| title_short | The complete chloroplast genome sequence of Ligustrum foliosum (Oleaceae), a species endemic to the Ulleungdo Island, Korea |
| title_sort | complete chloroplast genome sequence of ligustrum foliosum oleaceae a species endemic to the ulleungdo island korea |
| topic | chloroplast genome endemic species Ligustrum foliosum Oleaceae phylogenetic analysis |
| url | http://www.sciencedirect.com/science/article/pii/S2287884X22001273 |
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