Characterization of the mitogenomes of long-tailed giant rat, Leopoldamys sabanus and a comparative analysis with other Leopoldamys species
Two mitogenomes of long-tailed giant rat, Leopoldamys sabanus (Thomas, 1887), which belongs to the family Muridae were sequenced and assembled in this study. Both mitogenomes have a length of 15,973 bp and encode 13 protein-coding genes (PCGs), 22 transfer RNA genes, two ribosomal RNA genes and one...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-02-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1872433 |
| _version_ | 1797639023109341184 |
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| author | Puteri Nur Syahzanani Jahari Shahfiz Mohd Azman Kaviarasu Munian Nor Hazwani Ahmad Ruzman Mohd Shahir Shamsir Stine R. Richter Faezah Mohd Salleh |
| author_facet | Puteri Nur Syahzanani Jahari Shahfiz Mohd Azman Kaviarasu Munian Nor Hazwani Ahmad Ruzman Mohd Shahir Shamsir Stine R. Richter Faezah Mohd Salleh |
| author_sort | Puteri Nur Syahzanani Jahari |
| collection | DOAJ |
| description | Two mitogenomes of long-tailed giant rat, Leopoldamys sabanus (Thomas, 1887), which belongs to the family Muridae were sequenced and assembled in this study. Both mitogenomes have a length of 15,973 bp and encode 13 protein-coding genes (PCGs), 22 transfer RNA genes, two ribosomal RNA genes and one control region. The circular molecule of L. sabanus has a typical vertebrate gene arrangement. Phylogenetic and BLASTn analysis using 10 Leopoldamys species mitogenomes revealed sequence variation occurred within species from different time zones. Along with the taxonomic issues, this suggests a landscape change might influence genetic connectivity. |
| first_indexed | 2024-03-11T13:10:52Z |
| format | Article |
| id | doaj.art-a73b47c17fce4c0fb4af38c5fc794fe7 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:10:52Z |
| publishDate | 2021-02-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-a73b47c17fce4c0fb4af38c5fc794fe72023-11-03T14:08:19ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-02-016250250410.1080/23802359.2021.18724331872433Characterization of the mitogenomes of long-tailed giant rat, Leopoldamys sabanus and a comparative analysis with other Leopoldamys speciesPuteri Nur Syahzanani Jahari0Shahfiz Mohd Azman1Kaviarasu Munian2Nor Hazwani Ahmad Ruzman3Mohd Shahir Shamsir4Stine R. Richter5Faezah Mohd Salleh6Department of Biosciences, Faculty of Science, Universiti Teknologi MalaysiaForest Biodiversity Division, Forest Research Institute MalaysiaForest Biodiversity Division, Forest Research Institute MalaysiaForest Biodiversity Division, Forest Research Institute MalaysiaFaculty of Applied Sciences and Technology, Universiti Tun Hussein Onn Malaysia, Pagoh Higher Education HubSection for Evolutionary Genomics, The GLOBE Institute, University of CopenhagenDepartment of Biosciences, Faculty of Science, Universiti Teknologi MalaysiaTwo mitogenomes of long-tailed giant rat, Leopoldamys sabanus (Thomas, 1887), which belongs to the family Muridae were sequenced and assembled in this study. Both mitogenomes have a length of 15,973 bp and encode 13 protein-coding genes (PCGs), 22 transfer RNA genes, two ribosomal RNA genes and one control region. The circular molecule of L. sabanus has a typical vertebrate gene arrangement. Phylogenetic and BLASTn analysis using 10 Leopoldamys species mitogenomes revealed sequence variation occurred within species from different time zones. Along with the taxonomic issues, this suggests a landscape change might influence genetic connectivity.http://dx.doi.org/10.1080/23802359.2021.1872433leopoldamys sabanusmitogenomephylogenetic analysisgenetic connectivity |
| spellingShingle | Puteri Nur Syahzanani Jahari Shahfiz Mohd Azman Kaviarasu Munian Nor Hazwani Ahmad Ruzman Mohd Shahir Shamsir Stine R. Richter Faezah Mohd Salleh Characterization of the mitogenomes of long-tailed giant rat, Leopoldamys sabanus and a comparative analysis with other Leopoldamys species Mitochondrial DNA. Part B. Resources leopoldamys sabanus mitogenome phylogenetic analysis genetic connectivity |
| title | Characterization of the mitogenomes of long-tailed giant rat, Leopoldamys sabanus and a comparative analysis with other Leopoldamys species |
| title_full | Characterization of the mitogenomes of long-tailed giant rat, Leopoldamys sabanus and a comparative analysis with other Leopoldamys species |
| title_fullStr | Characterization of the mitogenomes of long-tailed giant rat, Leopoldamys sabanus and a comparative analysis with other Leopoldamys species |
| title_full_unstemmed | Characterization of the mitogenomes of long-tailed giant rat, Leopoldamys sabanus and a comparative analysis with other Leopoldamys species |
| title_short | Characterization of the mitogenomes of long-tailed giant rat, Leopoldamys sabanus and a comparative analysis with other Leopoldamys species |
| title_sort | characterization of the mitogenomes of long tailed giant rat leopoldamys sabanus and a comparative analysis with other leopoldamys species |
| topic | leopoldamys sabanus mitogenome phylogenetic analysis genetic connectivity |
| url | http://dx.doi.org/10.1080/23802359.2021.1872433 |
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