Genome-wide identification, characterization, and expression analysis of the Ovate family protein in Oryza sativa under biotic and abiotic stresses
The Ovate Family Proteins (OFPs) are plant-specific transcription factors with a conserved OVATE domain. The OFPs regulate organ shape in Arabidopsis and many crops, including rice, tomato, and melon. However, little is known regarding the OFPs' potential role in regulating plant immune respons...
| Main Authors: | , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Elsevier
2023-12-01
|
| Series: | Plant Stress |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2667064X23000957 |
| _version_ | 1797422519158833152 |
|---|---|
| author | Sheraz Ahmad Nazir Ahmad Jalal Bayar |
| author_facet | Sheraz Ahmad Nazir Ahmad Jalal Bayar |
| author_sort | Sheraz Ahmad |
| collection | DOAJ |
| description | The Ovate Family Proteins (OFPs) are plant-specific transcription factors with a conserved OVATE domain. The OFPs regulate organ shape in Arabidopsis and many crops, including rice, tomato, and melon. However, little is known regarding the OFPs' potential role in regulating plant immune response to biotic/abiotic stresses. Herein, we reported the identification, bioinformatic, and Insilco analysis of OFPs in rice (Oryza sativa L). Thirty-one OsOFP genes were identified from the rice genome database and further divided into six subgroups based on their sequence similarities. Gene expression analysis in developmental stages indicated that some members of the OsOFP gene family displayed tissue-specific patterns. Enrichment of hormonal-related cis-acting elements and varied expression under phytohormones further validated their participation in hormone-mediated plant growth. The microarray expression analysis showed their possible involvement against salinity, drought, brown planthopper (BPH)_striped rice stemborer (SSB) (OsOFP25), and rice leaf folder (RLF) (OsOFP26) infestations. The higher expression of OsOFP25 in the OsWRKY65-OE line implies their key role in reproductive biology. These results provide a systematic analysis of the OsOFPs and lay a foundation for the functional characterization of this gene family. |
| first_indexed | 2024-03-09T07:33:28Z |
| format | Article |
| id | doaj.art-a783cb5e58884591959b07ecbc5e34f6 |
| institution | Directory Open Access Journal |
| issn | 2667-064X |
| language | English |
| last_indexed | 2024-03-09T07:33:28Z |
| publishDate | 2023-12-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Plant Stress |
| spelling | doaj.art-a783cb5e58884591959b07ecbc5e34f62023-12-03T05:43:29ZengElsevierPlant Stress2667-064X2023-12-0110100228Genome-wide identification, characterization, and expression analysis of the Ovate family protein in Oryza sativa under biotic and abiotic stressesSheraz Ahmad0Nazir Ahmad1Jalal Bayar2College of Plant Protection, Yangzhou University, 48 Wenhui East Road, Yangzhou, Jiangsu 225009, PR ChinaDepartment of Zoology, Government Postgraduate Jahanzeb College, Swat, Saidu Sharif 19200, Pakistan; Corresponding author.Department of Agronomy, The University of Agriculture Peshawar, Peshawar 25120, PakistanThe Ovate Family Proteins (OFPs) are plant-specific transcription factors with a conserved OVATE domain. The OFPs regulate organ shape in Arabidopsis and many crops, including rice, tomato, and melon. However, little is known regarding the OFPs' potential role in regulating plant immune response to biotic/abiotic stresses. Herein, we reported the identification, bioinformatic, and Insilco analysis of OFPs in rice (Oryza sativa L). Thirty-one OsOFP genes were identified from the rice genome database and further divided into six subgroups based on their sequence similarities. Gene expression analysis in developmental stages indicated that some members of the OsOFP gene family displayed tissue-specific patterns. Enrichment of hormonal-related cis-acting elements and varied expression under phytohormones further validated their participation in hormone-mediated plant growth. The microarray expression analysis showed their possible involvement against salinity, drought, brown planthopper (BPH)_striped rice stemborer (SSB) (OsOFP25), and rice leaf folder (RLF) (OsOFP26) infestations. The higher expression of OsOFP25 in the OsWRKY65-OE line implies their key role in reproductive biology. These results provide a systematic analysis of the OsOFPs and lay a foundation for the functional characterization of this gene family.http://www.sciencedirect.com/science/article/pii/S2667064X23000957Ovate family proteinSalinityBiotic/abiotic stressesHormones |
| spellingShingle | Sheraz Ahmad Nazir Ahmad Jalal Bayar Genome-wide identification, characterization, and expression analysis of the Ovate family protein in Oryza sativa under biotic and abiotic stresses Plant Stress Ovate family protein Salinity Biotic/abiotic stresses Hormones |
| title | Genome-wide identification, characterization, and expression analysis of the Ovate family protein in Oryza sativa under biotic and abiotic stresses |
| title_full | Genome-wide identification, characterization, and expression analysis of the Ovate family protein in Oryza sativa under biotic and abiotic stresses |
| title_fullStr | Genome-wide identification, characterization, and expression analysis of the Ovate family protein in Oryza sativa under biotic and abiotic stresses |
| title_full_unstemmed | Genome-wide identification, characterization, and expression analysis of the Ovate family protein in Oryza sativa under biotic and abiotic stresses |
| title_short | Genome-wide identification, characterization, and expression analysis of the Ovate family protein in Oryza sativa under biotic and abiotic stresses |
| title_sort | genome wide identification characterization and expression analysis of the ovate family protein in oryza sativa under biotic and abiotic stresses |
| topic | Ovate family protein Salinity Biotic/abiotic stresses Hormones |
| url | http://www.sciencedirect.com/science/article/pii/S2667064X23000957 |
| work_keys_str_mv | AT sherazahmad genomewideidentificationcharacterizationandexpressionanalysisoftheovatefamilyproteininoryzasativaunderbioticandabioticstresses AT nazirahmad genomewideidentificationcharacterizationandexpressionanalysisoftheovatefamilyproteininoryzasativaunderbioticandabioticstresses AT jalalbayar genomewideidentificationcharacterizationandexpressionanalysisoftheovatefamilyproteininoryzasativaunderbioticandabioticstresses |