Characterization of Pinus densiflora var. zhangwuensis S.J.Zhang, C.X.Li & X.Y.Yuan complete chloroplast genome
Pinus densiflora var. zhangwuensis S.J.Zhang, C.X.Li & X.Y.Yuan, a tree species with promising afforestation potential in northern China. Here, we assembled and annotated the complete chloroplast (cp) genome of P. densiflora var. zhangwuensis using the Oxford Nanopore sequencing technology. The...
| Main Authors: | , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2021-12-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2021.2005486 |
| _version_ | 1797638729605578752 |
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| author | Qijing Xia Chunying Hao Baixi Zhang Yousry A. El-Kassaby Wei Li |
| author_facet | Qijing Xia Chunying Hao Baixi Zhang Yousry A. El-Kassaby Wei Li |
| author_sort | Qijing Xia |
| collection | DOAJ |
| description | Pinus densiflora var. zhangwuensis S.J.Zhang, C.X.Li & X.Y.Yuan, a tree species with promising afforestation potential in northern China. Here, we assembled and annotated the complete chloroplast (cp) genome of P. densiflora var. zhangwuensis using the Oxford Nanopore sequencing technology. The cp genome was 119,725 bp in length, exhibiting a typical quadripartite structure with a large single-copy (LSC: 65,552 bp) and a small single-copy (SSC: 53,183 bp) separated by a pair of inverted repeats regions (IRA and IRB: each of 495 bp) region. The overall GC content is 37.3%. The genome was predicted to encode 112 distinct genes, including 72 protein-coding, 36 tRNA, and four rRNA genes. Maximum-likelihood (ML) phylogenetic for cp genome sequences of 18 Pinaceae species revealed that P. densiflora var. zhangwuensis was closely related to Pinus sylvestris. |
| first_indexed | 2024-03-11T13:06:45Z |
| format | Article |
| id | doaj.art-a80d1d7a7a6d49e4af6fc620e897fc13 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:06:45Z |
| publishDate | 2021-12-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-a80d1d7a7a6d49e4af6fc620e897fc132023-11-03T14:36:00ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-12-016123515351610.1080/23802359.2021.20054862005486Characterization of Pinus densiflora var. zhangwuensis S.J.Zhang, C.X.Li & X.Y.Yuan complete chloroplast genomeQijing Xia0Chunying Hao1Baixi Zhang2Yousry A. El-Kassaby3Wei Li4National Engineering Laboratory for Forest Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry UniversityLiaoning Research Institute of Sandy Land Control and UtilizationDepartment of Forest and Conservation Sciences, Faculty of Forestry, University of British ColumbiaDepartment of Forest and Conservation Sciences, Faculty of Forestry, University of British ColumbiaNational Engineering Laboratory for Forest Tree Breeding, College of Biological Sciences and Technology, Beijing Forestry UniversityPinus densiflora var. zhangwuensis S.J.Zhang, C.X.Li & X.Y.Yuan, a tree species with promising afforestation potential in northern China. Here, we assembled and annotated the complete chloroplast (cp) genome of P. densiflora var. zhangwuensis using the Oxford Nanopore sequencing technology. The cp genome was 119,725 bp in length, exhibiting a typical quadripartite structure with a large single-copy (LSC: 65,552 bp) and a small single-copy (SSC: 53,183 bp) separated by a pair of inverted repeats regions (IRA and IRB: each of 495 bp) region. The overall GC content is 37.3%. The genome was predicted to encode 112 distinct genes, including 72 protein-coding, 36 tRNA, and four rRNA genes. Maximum-likelihood (ML) phylogenetic for cp genome sequences of 18 Pinaceae species revealed that P. densiflora var. zhangwuensis was closely related to Pinus sylvestris.http://dx.doi.org/10.1080/23802359.2021.2005486pinus densiflora var. zhangwuensis s.j.zhangc.x.li & x.y.yuanpinaceaechloroplast genomephylogenetic relationship |
| spellingShingle | Qijing Xia Chunying Hao Baixi Zhang Yousry A. El-Kassaby Wei Li Characterization of Pinus densiflora var. zhangwuensis S.J.Zhang, C.X.Li & X.Y.Yuan complete chloroplast genome Mitochondrial DNA. Part B. Resources pinus densiflora var. zhangwuensis s.j.zhang c.x.li & x.y.yuan pinaceae chloroplast genome phylogenetic relationship |
| title | Characterization of Pinus densiflora var. zhangwuensis S.J.Zhang, C.X.Li & X.Y.Yuan complete chloroplast genome |
| title_full | Characterization of Pinus densiflora var. zhangwuensis S.J.Zhang, C.X.Li & X.Y.Yuan complete chloroplast genome |
| title_fullStr | Characterization of Pinus densiflora var. zhangwuensis S.J.Zhang, C.X.Li & X.Y.Yuan complete chloroplast genome |
| title_full_unstemmed | Characterization of Pinus densiflora var. zhangwuensis S.J.Zhang, C.X.Li & X.Y.Yuan complete chloroplast genome |
| title_short | Characterization of Pinus densiflora var. zhangwuensis S.J.Zhang, C.X.Li & X.Y.Yuan complete chloroplast genome |
| title_sort | characterization of pinus densiflora var zhangwuensis s j zhang c x li x y yuan complete chloroplast genome |
| topic | pinus densiflora var. zhangwuensis s.j.zhang c.x.li & x.y.yuan pinaceae chloroplast genome phylogenetic relationship |
| url | http://dx.doi.org/10.1080/23802359.2021.2005486 |
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