PATLAB: A graphical computational software package for photoacoustic computed tomography research
Photoacoustic tomography (PAT) provides high resolution optical images of tissue at depths of up to several centimetres. This modality has been of interest to researchers for at least 30 years and is still the subject of intensive research. However, PAT researchers lack access to a comprehensive ope...
| Main Authors: | , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Elsevier
2022-12-01
|
| Series: | Photoacoustics |
| Subjects: | |
| Online Access: | http://www.sciencedirect.com/science/article/pii/S2213597922000696 |
| _version_ | 1828092422098255872 |
|---|---|
| author | P. Omidi L.C.M. Yip E. Rascevska M. Diop J.J.L. Carson |
| author_facet | P. Omidi L.C.M. Yip E. Rascevska M. Diop J.J.L. Carson |
| author_sort | P. Omidi |
| collection | DOAJ |
| description | Photoacoustic tomography (PAT) provides high resolution optical images of tissue at depths of up to several centimetres. This modality has been of interest to researchers for at least 30 years and is still the subject of intensive research. However, PAT researchers lack access to a comprehensive open-source graphical simulation and reconstruction software package. In this article, we introduce PATLAB, an open-source MATLAB-based graphical software package that can perform both PAT simulation and image reconstruction. PATLAB is simple to use yet is capable of complex PAT data processing tasks and offers advanced users a framework to build and test new methods. |
| first_indexed | 2024-04-11T06:28:30Z |
| format | Article |
| id | doaj.art-a84bd07a17f140b8a9f62225c325a960 |
| institution | Directory Open Access Journal |
| issn | 2213-5979 |
| language | English |
| last_indexed | 2024-04-11T06:28:30Z |
| publishDate | 2022-12-01 |
| publisher | Elsevier |
| record_format | Article |
| series | Photoacoustics |
| spelling | doaj.art-a84bd07a17f140b8a9f62225c325a9602022-12-22T04:40:15ZengElsevierPhotoacoustics2213-59792022-12-0128100404PATLAB: A graphical computational software package for photoacoustic computed tomography researchP. Omidi0L.C.M. Yip1E. Rascevska2M. Diop3J.J.L. Carson4Imaging Program, Lawson Health Research Institute, 268 Grosvenor St., London, ON N6A 4V2, Canada; School of Biomedical Engineering, Western University, 1151 Richmond St, London, ON N6A 3K7, CanadaImaging Program, Lawson Health Research Institute, 268 Grosvenor St., London, ON N6A 4V2, Canada; Department of Medical Biophysics, Schulich School of Medicine and Dentistry, Western University, 1151 Richmond St, London, ON N6A 3K7, CanadaImaging Program, Lawson Health Research Institute, 268 Grosvenor St., London, ON N6A 4V2, Canada; School of Biomedical Engineering, Western University, 1151 Richmond St, London, ON N6A 3K7, CanadaImaging Program, Lawson Health Research Institute, 268 Grosvenor St., London, ON N6A 4V2, Canada; School of Biomedical Engineering, Western University, 1151 Richmond St, London, ON N6A 3K7, Canada; Department of Medical Biophysics, Schulich School of Medicine and Dentistry, Western University, 1151 Richmond St, London, ON N6A 3K7, CanadaImaging Program, Lawson Health Research Institute, 268 Grosvenor St., London, ON N6A 4V2, Canada; School of Biomedical Engineering, Western University, 1151 Richmond St, London, ON N6A 3K7, Canada; Department of Medical Biophysics, Schulich School of Medicine and Dentistry, Western University, 1151 Richmond St, London, ON N6A 3K7, Canada; Department of Surgery, Schulich School of Medicine and Dentistry, Western University, 1151 Richmond St, London, ON N6A 3K7, Canada; Corresponding author at: Imaging Program, Lawson Health Research Institute, 268 Grosvenor St., London, ON N6A 4V2, Canada.Photoacoustic tomography (PAT) provides high resolution optical images of tissue at depths of up to several centimetres. This modality has been of interest to researchers for at least 30 years and is still the subject of intensive research. However, PAT researchers lack access to a comprehensive open-source graphical simulation and reconstruction software package. In this article, we introduce PATLAB, an open-source MATLAB-based graphical software package that can perform both PAT simulation and image reconstruction. PATLAB is simple to use yet is capable of complex PAT data processing tasks and offers advanced users a framework to build and test new methods.http://www.sciencedirect.com/science/article/pii/S2213597922000696Photoacoustic tomographyImage reconstructionBack projectionFiltered back projectionUniversal back projectionTime reversal |
| spellingShingle | P. Omidi L.C.M. Yip E. Rascevska M. Diop J.J.L. Carson PATLAB: A graphical computational software package for photoacoustic computed tomography research Photoacoustics Photoacoustic tomography Image reconstruction Back projection Filtered back projection Universal back projection Time reversal |
| title | PATLAB: A graphical computational software package for photoacoustic computed tomography research |
| title_full | PATLAB: A graphical computational software package for photoacoustic computed tomography research |
| title_fullStr | PATLAB: A graphical computational software package for photoacoustic computed tomography research |
| title_full_unstemmed | PATLAB: A graphical computational software package for photoacoustic computed tomography research |
| title_short | PATLAB: A graphical computational software package for photoacoustic computed tomography research |
| title_sort | patlab a graphical computational software package for photoacoustic computed tomography research |
| topic | Photoacoustic tomography Image reconstruction Back projection Filtered back projection Universal back projection Time reversal |
| url | http://www.sciencedirect.com/science/article/pii/S2213597922000696 |
| work_keys_str_mv | AT pomidi patlabagraphicalcomputationalsoftwarepackageforphotoacousticcomputedtomographyresearch AT lcmyip patlabagraphicalcomputationalsoftwarepackageforphotoacousticcomputedtomographyresearch AT erascevska patlabagraphicalcomputationalsoftwarepackageforphotoacousticcomputedtomographyresearch AT mdiop patlabagraphicalcomputationalsoftwarepackageforphotoacousticcomputedtomographyresearch AT jjlcarson patlabagraphicalcomputationalsoftwarepackageforphotoacousticcomputedtomographyresearch |