Accurate haplotype construction and detection of selection signatures enabled by high quality pig genome sequences
Abstract High-quality whole-genome resequencing in large-scale pig populations with pedigree structure and multiple breeds would enable accurate construction of haplotype and robust selection-signature detection. Here, we sequence 740 pigs, combine with 149 of our previously published resequencing d...
Main Authors: | Xinkai Tong, Dong Chen, Jianchao Hu, Shiyao Lin, Ziqi Ling, Huashui Ai, Zhiyan Zhang, Lusheng Huang |
---|---|
Format: | Article |
Language: | English |
Published: |
Nature Portfolio
2023-08-01
|
Series: | Nature Communications |
Online Access: | https://doi.org/10.1038/s41467-023-40434-3 |
Similar Items
-
Genetic diversity, linkage disequilibrium and selection signatures in chinese and Western pigs revealed by genome-wide SNP markers.
by: Huashui Ai, et al.
Published: (2013-01-01) -
Detection of genomic signatures for pig hairlessness using high-density SNP data
by: Ying SU,Yi LONG,Xinjun LIAO,Huashui AI,Zhiyan ZHANG,Bin YANG,Shijun XIAO,Jianhong TANG,Wenshui XIN,Lusheng HUANG,Jun REN,Nengshui DING
Published: (2014-12-01) -
Accurate and Efficient KIR Gene and Haplotype Inference From Genome Sequencing Reads With Novel K-mer Signatures
by: David Roe, et al.
Published: (2020-11-01) -
Omics-based construction of regulatory variants can be applied to help decipher pig liver-related traits
by: Ziqi Ling, et al.
Published: (2024-03-01) -
Revisiting the Evolutionary History of Pigs via De Novo Mutation Rate Estimation in A Three-generation Pedigree
by: Mingpeng Zhang, et al.
Published: (2022-12-01)