The Complete Genome of Probiotic <i>Lactobacillus sakei</i> Derived from Plateau Yak Feces

Probiotic bacteria are receiving increased attention due to the potential benefits to their hosts. Plateau yaks have resistance against diseases and stress, which is potentially related to their inner probiotics. To uncover the potential functional genes of yak probiotics, we sequenced the whole gen...

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Bibliographic Details
Main Authors: Kun Li, Juanjuan Liu, Zhibo Zeng, Muhammad Fakhar-e-Alam Kulyar, Yaping Wang, Aoyun Li, Zeeshan Ahmad Bhutta, Amjad Islam Aqib, Muhammad Shahzad, Jiakui Li, Desheng Qi
Format: Article
Language:English
Published: MDPI AG 2020-12-01
Series:Genes
Subjects:
Online Access:https://www.mdpi.com/2073-4425/11/12/1527
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Summary:Probiotic bacteria are receiving increased attention due to the potential benefits to their hosts. Plateau yaks have resistance against diseases and stress, which is potentially related to their inner probiotics. To uncover the potential functional genes of yak probiotics, we sequenced the whole genome of <i>Lactobacillus sakei</i> (<i>L. sakei</i>). The results showed that the genome length of <i>L. sakei</i> was 1.99 Mbp, with 1943 protein coding genes (21 rRNA, 65 tRNA, and 1 tmRNA). There were three plasmids found in this bacteria, with 88 protein coding genes. EggNOG annotation uncovered that the <i>L. sakei</i> genes were found to belong to J (translation, ribosomal structure, and biogenesis), L (replication, recombination, and repair), G (carbohydrate transport and metabolism), and K (transcription). GO annotation showed that most of the <i>L. sakei</i> genes were related to cellular processes, metabolic processes, biological regulation, localization, response to stimulus, and organization or biogenesis of cellular components. CAZy annotation found that there were 123 CAZys in the <i>L. sakei</i> genome, with glycosyl transferases and glycoside hydrolases. Our results revealed the genome characteristics of <i>L. sakei</i>, which may give insight into the future employment of this probiotic bacterium for its functional benefits.
ISSN:2073-4425