Current Methods and Pipelines for Image-Based Quantitation of Nuclear Shape and Nuclear Envelope Abnormalities
Any given cell type has an associated “normal” nuclear morphology, which is important to maintain proper cellular functioning and safeguard genomic integrity. Deviations from this can be indicative of diseases such as cancer or premature aging syndrome. To accurately assess nuclear abnormalities, it...
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| Format: | Article |
| Language: | English |
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MDPI AG
2022-01-01
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| Series: | Cells |
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| Online Access: | https://www.mdpi.com/2073-4409/11/3/347 |
| _version_ | 1797488598907355136 |
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| author | Anne F. J. Janssen Sophia Y. Breusegem Delphine Larrieu |
| author_facet | Anne F. J. Janssen Sophia Y. Breusegem Delphine Larrieu |
| author_sort | Anne F. J. Janssen |
| collection | DOAJ |
| description | Any given cell type has an associated “normal” nuclear morphology, which is important to maintain proper cellular functioning and safeguard genomic integrity. Deviations from this can be indicative of diseases such as cancer or premature aging syndrome. To accurately assess nuclear abnormalities, it is important to use quantitative measures of nuclear morphology. Here, we give an overview of several nuclear abnormalities, including micronuclei, nuclear envelope invaginations, blebs and ruptures, and review the current methods used for image-based quantification of these abnormalities. We discuss several parameters that can be used to quantify nuclear shape and compare their outputs using example images. In addition, we present new pipelines for quantitative analysis of nuclear blebs and invaginations. Quantitative analyses of nuclear aberrations and shape will be important in a wide range of applications, from assessments of cancer cell anomalies to studies of nucleus deformability under mechanical or other types of stress. |
| first_indexed | 2024-03-10T00:04:34Z |
| format | Article |
| id | doaj.art-a92c2a08f8b44ef7bbd34bfdeeeba94a |
| institution | Directory Open Access Journal |
| issn | 2073-4409 |
| language | English |
| last_indexed | 2024-03-10T00:04:34Z |
| publishDate | 2022-01-01 |
| publisher | MDPI AG |
| record_format | Article |
| series | Cells |
| spelling | doaj.art-a92c2a08f8b44ef7bbd34bfdeeeba94a2023-11-23T16:10:18ZengMDPI AGCells2073-44092022-01-0111334710.3390/cells11030347Current Methods and Pipelines for Image-Based Quantitation of Nuclear Shape and Nuclear Envelope AbnormalitiesAnne F. J. Janssen0Sophia Y. Breusegem1Delphine Larrieu2Department of Clinical Biochemistry, Addenbrookes Biomedical Campus, Cambridge Institute for Medical Research, University of Cambridge, Cambridge CB2 0XY, UKDepartment of Clinical Biochemistry, Addenbrookes Biomedical Campus, Cambridge Institute for Medical Research, University of Cambridge, Cambridge CB2 0XY, UKDepartment of Clinical Biochemistry, Addenbrookes Biomedical Campus, Cambridge Institute for Medical Research, University of Cambridge, Cambridge CB2 0XY, UKAny given cell type has an associated “normal” nuclear morphology, which is important to maintain proper cellular functioning and safeguard genomic integrity. Deviations from this can be indicative of diseases such as cancer or premature aging syndrome. To accurately assess nuclear abnormalities, it is important to use quantitative measures of nuclear morphology. Here, we give an overview of several nuclear abnormalities, including micronuclei, nuclear envelope invaginations, blebs and ruptures, and review the current methods used for image-based quantification of these abnormalities. We discuss several parameters that can be used to quantify nuclear shape and compare their outputs using example images. In addition, we present new pipelines for quantitative analysis of nuclear blebs and invaginations. Quantitative analyses of nuclear aberrations and shape will be important in a wide range of applications, from assessments of cancer cell anomalies to studies of nucleus deformability under mechanical or other types of stress.https://www.mdpi.com/2073-4409/11/3/347nuclear envelopenuclear envelope abnormalitylaminanuclear morphology |
| spellingShingle | Anne F. J. Janssen Sophia Y. Breusegem Delphine Larrieu Current Methods and Pipelines for Image-Based Quantitation of Nuclear Shape and Nuclear Envelope Abnormalities Cells nuclear envelope nuclear envelope abnormality lamina nuclear morphology |
| title | Current Methods and Pipelines for Image-Based Quantitation of Nuclear Shape and Nuclear Envelope Abnormalities |
| title_full | Current Methods and Pipelines for Image-Based Quantitation of Nuclear Shape and Nuclear Envelope Abnormalities |
| title_fullStr | Current Methods and Pipelines for Image-Based Quantitation of Nuclear Shape and Nuclear Envelope Abnormalities |
| title_full_unstemmed | Current Methods and Pipelines for Image-Based Quantitation of Nuclear Shape and Nuclear Envelope Abnormalities |
| title_short | Current Methods and Pipelines for Image-Based Quantitation of Nuclear Shape and Nuclear Envelope Abnormalities |
| title_sort | current methods and pipelines for image based quantitation of nuclear shape and nuclear envelope abnormalities |
| topic | nuclear envelope nuclear envelope abnormality lamina nuclear morphology |
| url | https://www.mdpi.com/2073-4409/11/3/347 |
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