Evo‐Scope: Fully automated assessment of correlated evolution on phylogenetic trees

Evo‐Scope: Fully automated assessment of correlated evolution on phylogenetic trees

Abstract Correlated evolution describes how multiple biological traits evolve together. Recently developed methods provide increasingly detailed results of correlated evolution, sometimes at elevated computational costs. Here, we present evo‐scope, a fast and fully automated pipeline with minimal in...

Bibliografske podrobnosti
Main Authors:	Maxime Godfroid, Charles Coluzzi, Amaury Lambert, Philippe Glaser, Eduardo P. C. Rocha, Guillaume Achaz
Format:	Article
Jezik:	English
Izdano:	Wiley 2024-02-01
Serija:	Methods in Ecology and Evolution
Teme:	correlated evolution phylogenetics workflow
Online dostop:	https://doi.org/10.1111/2041-210X.14190

Podobne knjige/članki

CamITree: a streamlined software for phylogenetic analysis of viral and mitochondrial genomes
od: Peng Sun, et al.
Izdano: (2025-02-01)

MAGNETO: An Automated Workflow for Genome-Resolved Metagenomics
od: Benjamin Churcheward, et al.
Izdano: (2022-08-01)

EvoPhylo: An r package for pre‐ and postprocessing of morphological data from relaxed clock Bayesian phylogenetics
od: Tiago R. Simões, et al.
Izdano: (2023-08-01)

The 2006 NESCent Phyloinformatics Hackathon: A Field Report
od: Rutger A. Vos, et al.
Izdano: (2007-01-01)

TreeViewer: Flexible, modular software to visualise and manipulate phylogenetic trees
od: Giorgio Bianchini, et al.
Izdano: (2024-02-01)

Visualizing incompatibilities in phylogenetic trees using consensus outlines
od: Daniel H. Huson, et al.
Izdano: (2023-06-01)

Root Digger: a root placement program for phylogenetic trees
od: Ben Bettisworth, et al.
Izdano: (2021-05-01)

Inferences on the evolution of the ascorbic acid synthesis pathway in insects using Phylogenetic Tree Collapser (PTC), a tool for the automated collapsing of phylogenetic trees using taxonomic information
od: Glez-Peña Daniel, et al.
Izdano: (2024-07-01)

Imputing Phylogenetic Trees Using Tropical Polytopes over the Space of Phylogenetic Trees
od: Ruriko Yoshida
Izdano: (2023-08-01)

PhySortR: a fast, flexible tool for sorting phylogenetic trees in R
od: Timothy G. Stephens, et al.
Izdano: (2016-05-01)

Challenges for the development of automated RNA-seq analyses pipelines
od: Beukers, Matthieu, et al.
Izdano: (2023-07-01)

Evaluation of automated calibration and quality control processes using the Aptio total laboratory automation system
od: Namhee Kim, et al.
Izdano: (2022-12-01)

Phylo_dCor: distance correlation as a novel metric for phylogenetic profiling
od: Gabriella Sferra, et al.
Izdano: (2017-09-01)

Spectral cluster supertree: fast and statistically robust merging of rooted phylogenetic trees
od: Robert N. McArthur, et al.
Izdano: (2024-10-01)

ezTree: an automated pipeline for identifying phylogenetic marker genes and inferring evolutionary relationships among uncultivated prokaryotic draft genomes
od: Yu-Wei Wu
Izdano: (2018-01-01)

Computational Testing for Automated Preprocessing 2: Practical Demonstration of a System for Scientific Data-Processing Workflow Management for High-Volume EEG
od: Benjamin U. Cowley, et al.
Izdano: (2018-04-01)

A Fully Digital Auricular Splint Workflow for Post-Keloid Excision
od: Rahmat Maria, et al.
Izdano: (2023-11-01)

Investigation of Microservice-Based Workflow Management Solutions for Industrial Automation
od: Jaime Garcia Represa, et al.
Izdano: (2023-01-01)

Phylogenetic trees: Grammar versus vocabulary
od: Vladimir N. Polyakov, et al.
Izdano: (2022-03-01)

Linear-time algorithms for phylogenetic tree completion under Robinson–Foulds distance
od: Mukul S. Bansal
Izdano: (2020-04-01)

Sapporo: A workflow execution service that encourages the reuse of workflows in various languages in bioinformatics [version 2; peer review: 1 approved, 2 approved with reservations]
od: Manabu Ishii, et al.
Izdano: (2024-06-01)

Mobile robots in automated laboratory workflows
od: J. Huang, et al.
Izdano: (2025-02-01)

Workflow handbook 1997 /
od: Lawrence, Peter
Izdano: (1997)

Very few sites can reshape the inferred phylogenetic tree
od: Warren R. Francis, et al.
Izdano: (2020-07-01)

iMAP: A Web Server for Metabolomics Data Integrative Analysis
od: Di Zhou, et al.
Izdano: (2021-05-01)

Representing non-crossing cuts by phylogenetic trees
od: Thomas Lange
Izdano: (2021-10-01)

Learning Hyperbolic Embedding for Phylogenetic Tree Placement and Updates
od: Yueyu Jiang, et al.
Izdano: (2022-08-01)

Analysis on Algorithms for Constructing Phylogenetic Trees From Distances
od: Juan Wang
Izdano: (2019-01-01)

The Bacteria Genome Pipeline (BAGEP): an automated, scalable workflow for bacteria genomes with Snakemake
od: Idowu B. Olawoye, et al.
Izdano: (2020-10-01)

A scalable method for identifying frequent subtrees in sets of large phylogenetic trees
od: Ramu Avinash, et al.
Izdano: (2012-10-01)

Incongruencies in Vaccinia Virus Phylogenetic Trees
od: Chad Smithson, et al.
Izdano: (2014-10-01)

TreeSnatcher plus: capturing phylogenetic trees from images
od: Laubach Thomas, et al.
Izdano: (2012-05-01)

Cytoscape Automation: empowering workflow-based network analysis
od: David Otasek, et al.
Izdano: (2019-09-01)

getphylo: rapid and automatic generation of multi-locus phylogenetic trees
od: T. J. Booth, et al.
Izdano: (2025-01-01)

Flux-P: Automating Metabolic Flux Analysis
od: Birgitta E. Ebert, et al.
Izdano: (2012-11-01)

SEDA 2024 update: enhancing the SEquence DAtaset builder for seamless integration into automated data analysis pipelines
od: Miguel Reboiro-Jato, et al.
Izdano: (2024-05-01)

HPexome: An automated tool for processing whole-exome sequencing data
od: Lucas L. Cendes, et al.
Izdano: (2020-01-01)

Using community phylogenetics to assess phylogenetic structure in the Fitzcarrald region of Western Amazonia
od: Jack M. Craig, et al.
Izdano: (2020-06-01)

CSS Preprocessing: Tools and Automation Techniques
od: Ricardo Queirós
Izdano: (2018-01-01)

Determination of Pseudomonas Bacteria Species and Analysis of Phylogenetic Tree using Bioinformatics Method
od: Yoyon Suyono
Izdano: (2016-02-01)