Exploration of genes encoding KEGG pathway enzymes in rhizospheric microbiome of the wild plant Abutilon fruticosum
Abstract The operative mechanisms and advantageous synergies existing between the rhizobiome and the wild plant species Abutilon fruticosum were studied. Within the purview of this scientific study, the reservoir of genes in the rhizobiome, encoding the most highly enriched enzymes, was dominantly c...
| Main Authors: | , , , , , , , , , , , , |
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| Format: | Article |
| Language: | English |
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SpringerOpen
2024-02-01
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| Series: | AMB Express |
| Subjects: | |
| Online Access: | https://doi.org/10.1186/s13568-024-01678-4 |
| _version_ | 1827326121568370688 |
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| author | Aala A. Abulfaraj Ashwag Y. Shami Nahaa M. Alotaibi Maryam M. Alomran Abeer S. Aloufi Abeer Al-Andal Nawwaf R. AlHamdan Fatimah M. Alshehrei Fatmah O. Sefrji Khloud H. Alsaadi Haneen W. Abuauf Sahar A. Alshareef Rewaa S. Jalal |
| author_facet | Aala A. Abulfaraj Ashwag Y. Shami Nahaa M. Alotaibi Maryam M. Alomran Abeer S. Aloufi Abeer Al-Andal Nawwaf R. AlHamdan Fatimah M. Alshehrei Fatmah O. Sefrji Khloud H. Alsaadi Haneen W. Abuauf Sahar A. Alshareef Rewaa S. Jalal |
| author_sort | Aala A. Abulfaraj |
| collection | DOAJ |
| description | Abstract The operative mechanisms and advantageous synergies existing between the rhizobiome and the wild plant species Abutilon fruticosum were studied. Within the purview of this scientific study, the reservoir of genes in the rhizobiome, encoding the most highly enriched enzymes, was dominantly constituted by members of phylum Thaumarchaeota within the archaeal kingdom, phylum Proteobacteria within the bacterial kingdom, and the phylum Streptophyta within the eukaryotic kingdom. The ensemble of enzymes encoded through plant exudation exhibited affiliations with 15 crosstalking KEGG (Kyoto Encyclopaedia of Genes and Genomes) pathways. The ultimate goal underlying root exudation, as surmised from the present investigation, was the biosynthesis of saccharides, amino acids, and nucleic acids, which are imperative for the sustenance, propagation, or reproduction of microbial consortia. The symbiotic companionship existing between the wild plant and its associated rhizobiome amplifies the resilience of the microbial community against adverse abiotic stresses, achieved through the orchestration of ABA (abscisic acid) signaling and its cascading downstream effects. Emergent from the process of exudation are pivotal bioactive compounds including ATP, D-ribose, pyruvate, glucose, glutamine, and thiamine diphosphate. In conclusion, we hypothesize that future efforts to enhance the growth and productivity of commercially important crop plants under both favorable and unfavorable environmental conditions may focus on manipulating plant rhizobiomes. |
| first_indexed | 2024-03-07T14:39:02Z |
| format | Article |
| id | doaj.art-ab8caf7632b247cd9a2911113b03c13e |
| institution | Directory Open Access Journal |
| issn | 2191-0855 |
| language | English |
| last_indexed | 2024-03-07T14:39:02Z |
| publishDate | 2024-02-01 |
| publisher | SpringerOpen |
| record_format | Article |
| series | AMB Express |
| spelling | doaj.art-ab8caf7632b247cd9a2911113b03c13e2024-03-05T20:27:28ZengSpringerOpenAMB Express2191-08552024-02-0114112110.1186/s13568-024-01678-4Exploration of genes encoding KEGG pathway enzymes in rhizospheric microbiome of the wild plant Abutilon fruticosumAala A. Abulfaraj0Ashwag Y. Shami1Nahaa M. Alotaibi2Maryam M. Alomran3Abeer S. Aloufi4Abeer Al-Andal5Nawwaf R. AlHamdan6Fatimah M. Alshehrei7Fatmah O. Sefrji8Khloud H. Alsaadi9Haneen W. Abuauf10Sahar A. Alshareef11Rewaa S. Jalal12Biological Sciences Department, College of Science & Arts, King Abdulaziz UniversityDepartment of Biology, College of Science, Princess Nourah bint Abdulrahman UniversityDepartment of Biology, College of Science, Princess Nourah bint Abdulrahman UniversityDepartment of Biology, College of Science, Princess Nourah bint Abdulrahman UniversityDepartment of Biology, College of Science, Princess Nourah bint Abdulrahman UniversityDepartment of Biology, College of Science, King Khalid UniversityDar AlThikr SchoolsDepartment of Biology, Jumum College University, Umm Al-Qura UniversityDepartment of Biology, College of Science, Taibah UniversityDepartment of Biological Science, College of Science, University of JeddahDepartment of Biology, Faculty of Applied Science, Umm Al-Qura UniversityDepartment of Biological Science, College of Science and Arts at Khulis, University of JeddahDepartment of Biological Science, College of Science, University of JeddahAbstract The operative mechanisms and advantageous synergies existing between the rhizobiome and the wild plant species Abutilon fruticosum were studied. Within the purview of this scientific study, the reservoir of genes in the rhizobiome, encoding the most highly enriched enzymes, was dominantly constituted by members of phylum Thaumarchaeota within the archaeal kingdom, phylum Proteobacteria within the bacterial kingdom, and the phylum Streptophyta within the eukaryotic kingdom. The ensemble of enzymes encoded through plant exudation exhibited affiliations with 15 crosstalking KEGG (Kyoto Encyclopaedia of Genes and Genomes) pathways. The ultimate goal underlying root exudation, as surmised from the present investigation, was the biosynthesis of saccharides, amino acids, and nucleic acids, which are imperative for the sustenance, propagation, or reproduction of microbial consortia. The symbiotic companionship existing between the wild plant and its associated rhizobiome amplifies the resilience of the microbial community against adverse abiotic stresses, achieved through the orchestration of ABA (abscisic acid) signaling and its cascading downstream effects. Emergent from the process of exudation are pivotal bioactive compounds including ATP, D-ribose, pyruvate, glucose, glutamine, and thiamine diphosphate. In conclusion, we hypothesize that future efforts to enhance the growth and productivity of commercially important crop plants under both favorable and unfavorable environmental conditions may focus on manipulating plant rhizobiomes.https://doi.org/10.1186/s13568-024-01678-4mWGSRhizobiomeExudationBiotic stressAbiotic stressABA |
| spellingShingle | Aala A. Abulfaraj Ashwag Y. Shami Nahaa M. Alotaibi Maryam M. Alomran Abeer S. Aloufi Abeer Al-Andal Nawwaf R. AlHamdan Fatimah M. Alshehrei Fatmah O. Sefrji Khloud H. Alsaadi Haneen W. Abuauf Sahar A. Alshareef Rewaa S. Jalal Exploration of genes encoding KEGG pathway enzymes in rhizospheric microbiome of the wild plant Abutilon fruticosum AMB Express mWGS Rhizobiome Exudation Biotic stress Abiotic stress ABA |
| title | Exploration of genes encoding KEGG pathway enzymes in rhizospheric microbiome of the wild plant Abutilon fruticosum |
| title_full | Exploration of genes encoding KEGG pathway enzymes in rhizospheric microbiome of the wild plant Abutilon fruticosum |
| title_fullStr | Exploration of genes encoding KEGG pathway enzymes in rhizospheric microbiome of the wild plant Abutilon fruticosum |
| title_full_unstemmed | Exploration of genes encoding KEGG pathway enzymes in rhizospheric microbiome of the wild plant Abutilon fruticosum |
| title_short | Exploration of genes encoding KEGG pathway enzymes in rhizospheric microbiome of the wild plant Abutilon fruticosum |
| title_sort | exploration of genes encoding kegg pathway enzymes in rhizospheric microbiome of the wild plant abutilon fruticosum |
| topic | mWGS Rhizobiome Exudation Biotic stress Abiotic stress ABA |
| url | https://doi.org/10.1186/s13568-024-01678-4 |
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