The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Blue Mountain’ (Rubiaceae)
We presented complete chloroplast genome of Coffea arabica BM1 which is 155,189 bp long and has four subregions: 85,159 bp of large single copy (LSC), and 18,135 bp of small single copy (SSC) regions are separated by 25,946 bp of inverted repeat (IR) regions including 131 genes (86 protein-coding ge...
| Main Authors: | , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-07-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1636729 |
| _version_ | 1797639736817352704 |
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| author | Jongsun Park Yongsung Kim Hong Xi Kyeong-In Heo |
| author_facet | Jongsun Park Yongsung Kim Hong Xi Kyeong-In Heo |
| author_sort | Jongsun Park |
| collection | DOAJ |
| description | We presented complete chloroplast genome of Coffea arabica BM1 which is 155,189 bp long and has four subregions: 85,159 bp of large single copy (LSC), and 18,135 bp of small single copy (SSC) regions are separated by 25,946 bp of inverted repeat (IR) regions including 131 genes (86 protein-coding genes, 8 rRNAs, and 37 tRNAs). The overall GC content of the chloroplast genome is 37.4% and those in the LSC, SSC, and IR regions are 35.4, 31.3, and 43.0%, respectively. Low level of cultivar specific sequence variations was found among seven coffee chloroplast genomes. |
| first_indexed | 2024-03-11T13:21:48Z |
| format | Article |
| id | doaj.art-ac03087a3d6044fca9faaab64390cc51 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:21:48Z |
| publishDate | 2019-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-ac03087a3d6044fca9faaab64390cc512023-11-03T10:28:35ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-07-01422436243710.1080/23802359.2019.16367291636729The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Blue Mountain’ (Rubiaceae)Jongsun Park0Yongsung Kim1Hong Xi2Kyeong-In Heo3InfoBoss Co., Ltd.InfoBoss Co., Ltd.InfoBoss Co., Ltd.InfoBoss Co., Ltd.We presented complete chloroplast genome of Coffea arabica BM1 which is 155,189 bp long and has four subregions: 85,159 bp of large single copy (LSC), and 18,135 bp of small single copy (SSC) regions are separated by 25,946 bp of inverted repeat (IR) regions including 131 genes (86 protein-coding genes, 8 rRNAs, and 37 tRNAs). The overall GC content of the chloroplast genome is 37.4% and those in the LSC, SSC, and IR regions are 35.4, 31.3, and 43.0%, respectively. Low level of cultivar specific sequence variations was found among seven coffee chloroplast genomes.http://dx.doi.org/10.1080/23802359.2019.1636729coffea arabicablue mountaincultivar-specific sequence variationschloroplast genome |
| spellingShingle | Jongsun Park Yongsung Kim Hong Xi Kyeong-In Heo The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Blue Mountain’ (Rubiaceae) Mitochondrial DNA. Part B. Resources coffea arabica blue mountain cultivar-specific sequence variations chloroplast genome |
| title | The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Blue Mountain’ (Rubiaceae) |
| title_full | The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Blue Mountain’ (Rubiaceae) |
| title_fullStr | The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Blue Mountain’ (Rubiaceae) |
| title_full_unstemmed | The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Blue Mountain’ (Rubiaceae) |
| title_short | The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Blue Mountain’ (Rubiaceae) |
| title_sort | complete chloroplast genome of coffee tree coffea arabica l blue mountain rubiaceae |
| topic | coffea arabica blue mountain cultivar-specific sequence variations chloroplast genome |
| url | http://dx.doi.org/10.1080/23802359.2019.1636729 |
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