Rapid on-site detection of harmful algal blooms: real-time cyanobacteria identification using Oxford Nanopore sequencing

Rapid on-site detection of harmful algal blooms: real-time cyanobacteria identification using Oxford Nanopore sequencing

With the increasing occurrence and severity of cyanobacterial harmful algal blooms (cHAB) at the global scale, there is an urgent need for rapid, accurate, accessible, and cost-effective detection tools. Here, we detail the RosHAB workflow, an innovative, in-the-field applicable genomics approach fo...

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Bibliographic Details
Main Authors: Marianne Potvin, Jeff Gauthier, Christophe Langevin, Vani Mohit, Naíla Barbosa da Costa, Thomas Deschênes, Maude Pomerleau, Irena Kukavica-Ibrulj, Daniel Verreault, Jérôme Comte, Roger C. Levesque
Format: Article
Language:English
Published: Frontiers Media S.A. 2023-11-01
Series:Frontiers in Microbiology
Subjects:
cyanobacteria
harmful algal blooms
on-site detection
Oxford Nanopore technologies
whole genome sequencing
cyanobacteria genomic database
Online Access:https://www.frontiersin.org/articles/10.3389/fmicb.2023.1267652/full

Internet

https://www.frontiersin.org/articles/10.3389/fmicb.2023.1267652/full

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