The complete plastome sequence of Platanthera japonica (Orchidaceae): an endangered medicinal and ornamental plant
Platanthera japonica (Thunb. ex A. Marray) Lindl belongs to the genus Platanthera within family Orchidaceae, is an endangered herbal species in the East Asia area. In this study, the complete plastome sequence (cpDNA) of P. japonica was determined by next-generation Illumina sequencing. The cpDNA of...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1704643 |
| _version_ | 1797639517328375808 |
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| author | Xiao Zhang Huaizhu Li Huan Huang Qiaoli Wang |
| author_facet | Xiao Zhang Huaizhu Li Huan Huang Qiaoli Wang |
| author_sort | Xiao Zhang |
| collection | DOAJ |
| description | Platanthera japonica (Thunb. ex A. Marray) Lindl belongs to the genus Platanthera within family Orchidaceae, is an endangered herbal species in the East Asia area. In this study, the complete plastome sequence (cpDNA) of P. japonica was determined by next-generation Illumina sequencing. The cpDNA of this herbal plant is 155,409 bp in size, with a pair of inverted repeat (IR) regions of 26,933 bp that separate a large single-copy (LSC) region of 84,049 bp and a small single-copy (SSC) region of 17,494 bp. The GC content in plastome is 36.9%, and the IR region (43.2%) is higher than that of the LSC and SSC region (34.4% and 29.7%, respectively), which is similar with other Orchidaceae plastomes. The assembled plastome encoded 133 genes, which included 38 tRNA genes, 8 rRNA genes, and 87 protein-coding genes. A total of 24 species were used to construct the phylogenetic relationships among P. japonica and other related species within Orchidaceae. The results showed that P. japonica is closely related to Platanthera chlorantha. |
| first_indexed | 2024-03-11T13:17:50Z |
| format | Article |
| id | doaj.art-ac7480a8f3a04834ba8bb7dba5e8d976 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:17:50Z |
| publishDate | 2020-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-ac7480a8f3a04834ba8bb7dba5e8d9762023-11-03T11:00:19ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-01-015146846910.1080/23802359.2019.17046431704643The complete plastome sequence of Platanthera japonica (Orchidaceae): an endangered medicinal and ornamental plantXiao Zhang0Huaizhu Li1Huan Huang2Qiaoli Wang3School of Chemistry and Chemical Engineering, Xianyang Normal UniversitySchool of Chemistry and Chemical Engineering, Xianyang Normal UniversitySchool of Chemistry and Chemical Engineering, Xianyang Normal UniversitySchool of Chemistry and Chemical Engineering, Xianyang Normal UniversityPlatanthera japonica (Thunb. ex A. Marray) Lindl belongs to the genus Platanthera within family Orchidaceae, is an endangered herbal species in the East Asia area. In this study, the complete plastome sequence (cpDNA) of P. japonica was determined by next-generation Illumina sequencing. The cpDNA of this herbal plant is 155,409 bp in size, with a pair of inverted repeat (IR) regions of 26,933 bp that separate a large single-copy (LSC) region of 84,049 bp and a small single-copy (SSC) region of 17,494 bp. The GC content in plastome is 36.9%, and the IR region (43.2%) is higher than that of the LSC and SSC region (34.4% and 29.7%, respectively), which is similar with other Orchidaceae plastomes. The assembled plastome encoded 133 genes, which included 38 tRNA genes, 8 rRNA genes, and 87 protein-coding genes. A total of 24 species were used to construct the phylogenetic relationships among P. japonica and other related species within Orchidaceae. The results showed that P. japonica is closely related to Platanthera chlorantha.http://dx.doi.org/10.1080/23802359.2019.1704643plastomeplatanthera japonicaillumina sequencingphylogeny |
| spellingShingle | Xiao Zhang Huaizhu Li Huan Huang Qiaoli Wang The complete plastome sequence of Platanthera japonica (Orchidaceae): an endangered medicinal and ornamental plant Mitochondrial DNA. Part B. Resources plastome platanthera japonica illumina sequencing phylogeny |
| title | The complete plastome sequence of Platanthera japonica (Orchidaceae): an endangered medicinal and ornamental plant |
| title_full | The complete plastome sequence of Platanthera japonica (Orchidaceae): an endangered medicinal and ornamental plant |
| title_fullStr | The complete plastome sequence of Platanthera japonica (Orchidaceae): an endangered medicinal and ornamental plant |
| title_full_unstemmed | The complete plastome sequence of Platanthera japonica (Orchidaceae): an endangered medicinal and ornamental plant |
| title_short | The complete plastome sequence of Platanthera japonica (Orchidaceae): an endangered medicinal and ornamental plant |
| title_sort | complete plastome sequence of platanthera japonica orchidaceae an endangered medicinal and ornamental plant |
| topic | plastome platanthera japonica illumina sequencing phylogeny |
| url | http://dx.doi.org/10.1080/23802359.2019.1704643 |
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