<it>GExplore</it>: a web server for integrated queries of protein domains, gene expression and mutant phenotypes

<p>Abstract</p> <p>Background</p> <p>The majority of the genes even in well-studied multi-cellular model organisms have not been functionally characterized yet. Mining the numerous genome wide data sets related to protein function to retrieve potential candidate genes f...

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Bibliographic Details
Main Authors: Chen Nansheng, Ng Man-Ping, Hutter Harald
Format: Article
Language:English
Published: BMC 2009-11-01
Series:BMC Genomics
Online Access:http://www.biomedcentral.com/1471-2164/10/529
Description
Summary:<p>Abstract</p> <p>Background</p> <p>The majority of the genes even in well-studied multi-cellular model organisms have not been functionally characterized yet. Mining the numerous genome wide data sets related to protein function to retrieve potential candidate genes for a particular biological process remains a challenge.</p> <p>Description</p> <p>GExplore has been developed to provide a user-friendly database interface for data mining at the gene expression/protein function level to help in hypothesis development and experiment design. It supports combinatorial searches for proteins with certain domains, tissue- or developmental stage-specific expression patterns, and mutant phenotypes. GExplore operates on a stand-alone database and has fast response times, which is essential for exploratory searches. The interface is not only user-friendly, but also modular so that it accommodates additional data sets in the future.</p> <p>Conclusion</p> <p>GExplore is an online database for quick mining of data related to gene and protein function, providing a multi-gene display of data sets related to the domain composition of proteins as well as expression and phenotype data. GExplore is publicly available at: <url>http://genome.sfu.ca/gexplore/</url></p>
ISSN:1471-2164