Chloroplast genome features and phylogenomic placement of Lespedeza bicolor (Fabaceae)
The complete chloroplast genome (plastome) of a deciduous shrub Lespedeza bicolor (commonly called bush clover) was determined in this study. The plastome was 148,930 bp in size with a canonical quadripartite structure, including two inverted repeats regions of 23,827 bp for each, a large single-cop...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2020-04-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2020.1753594 |
| _version_ | 1797639233922400256 |
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| author | Shou-Jin Fan Yang Yu Wen-Qing Li Xiu-Xiu Guo Xiao-Jian Qu |
| author_facet | Shou-Jin Fan Yang Yu Wen-Qing Li Xiu-Xiu Guo Xiao-Jian Qu |
| author_sort | Shou-Jin Fan |
| collection | DOAJ |
| description | The complete chloroplast genome (plastome) of a deciduous shrub Lespedeza bicolor (commonly called bush clover) was determined in this study. The plastome was 148,930 bp in size with a canonical quadripartite structure, including two inverted repeats regions of 23,827 bp for each, a large single-copy region of 82,338 bp in length, and a small single-copy region of 18,938 bp in length. The overall guanine-cytosine (GC) content of this plastome was 35.0%. A total of 112 unique genes was annotated in this plastome, including four rRNA genes, 30 tRNA genes, and 78 protein-coding genes. Among them, two protein-coding genes (clpP and ycf3) contained two introns, and eight protein-coding genes (atpF, ndhA, ndhB, petB, petD, rpl16, rpoC1, and rps16) and six tRNA genes (trnA-UGC, trnG-UCC, trnI-GAU, trnK-UUU, trnL-UAA, and trnV-UAC) contained one intron. ML phylogenetic analysis showed that L. bicolor was sister to other Lespedeza species. |
| first_indexed | 2024-03-11T13:14:57Z |
| format | Article |
| id | doaj.art-add5935318d54250bed5a422698fe6ae |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:14:57Z |
| publishDate | 2020-04-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-add5935318d54250bed5a422698fe6ae2023-11-03T13:50:20ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592020-04-01521870187110.1080/23802359.2020.17535941753594Chloroplast genome features and phylogenomic placement of Lespedeza bicolor (Fabaceae)Shou-Jin Fan0Yang Yu1Wen-Qing Li2Xiu-Xiu Guo3Xiao-Jian Qu4Shandong Normal UniversityShandong Normal UniversityShandong Provincial Center of Forest Tree Germplasm ResourcesShandong Normal UniversityShandong Normal UniversityThe complete chloroplast genome (plastome) of a deciduous shrub Lespedeza bicolor (commonly called bush clover) was determined in this study. The plastome was 148,930 bp in size with a canonical quadripartite structure, including two inverted repeats regions of 23,827 bp for each, a large single-copy region of 82,338 bp in length, and a small single-copy region of 18,938 bp in length. The overall guanine-cytosine (GC) content of this plastome was 35.0%. A total of 112 unique genes was annotated in this plastome, including four rRNA genes, 30 tRNA genes, and 78 protein-coding genes. Among them, two protein-coding genes (clpP and ycf3) contained two introns, and eight protein-coding genes (atpF, ndhA, ndhB, petB, petD, rpl16, rpoC1, and rps16) and six tRNA genes (trnA-UGC, trnG-UCC, trnI-GAU, trnK-UUU, trnL-UAA, and trnV-UAC) contained one intron. ML phylogenetic analysis showed that L. bicolor was sister to other Lespedeza species.http://dx.doi.org/10.1080/23802359.2020.1753594lespedeza bicolor plastomephylogeny |
| spellingShingle | Shou-Jin Fan Yang Yu Wen-Qing Li Xiu-Xiu Guo Xiao-Jian Qu Chloroplast genome features and phylogenomic placement of Lespedeza bicolor (Fabaceae) Mitochondrial DNA. Part B. Resources lespedeza bicolor plastome phylogeny |
| title | Chloroplast genome features and phylogenomic placement of Lespedeza bicolor (Fabaceae) |
| title_full | Chloroplast genome features and phylogenomic placement of Lespedeza bicolor (Fabaceae) |
| title_fullStr | Chloroplast genome features and phylogenomic placement of Lespedeza bicolor (Fabaceae) |
| title_full_unstemmed | Chloroplast genome features and phylogenomic placement of Lespedeza bicolor (Fabaceae) |
| title_short | Chloroplast genome features and phylogenomic placement of Lespedeza bicolor (Fabaceae) |
| title_sort | chloroplast genome features and phylogenomic placement of lespedeza bicolor fabaceae |
| topic | lespedeza bicolor plastome phylogeny |
| url | http://dx.doi.org/10.1080/23802359.2020.1753594 |
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