Multi-omics analysis in developmental bone biology

Multi-omics analysis in developmental bone biology

Single-cell omics and multi-omics have revolutionized our understanding of molecular and cellular biological processes at a single-cell level. In bone biology, the combination of single-cell RNA-sequencing analyses and in vivo lineage-tracing approaches has successfully identified multi-cellular div...

Full description

Bibliographic Details
Main Authors:	Yuki Matsushita, Azumi Noguchi, Wanida Ono, Noriaki Ono
Format:	Article
Language:	English
Published:	Elsevier 2023-12-01
Series:	Japanese Dental Science Review
Subjects:	Single-cell RNA-sequencing (scRNA-seq) Single-nuclei ATAC-sequencing (snATAC-seq) Multi-omics Bone marrow stromal cells (BMSCs) Skeletal stem cells (SSCs) In vivo lineage-tracing
Online Access:	http://www.sciencedirect.com/science/article/pii/S1882761623000364

Similar Items

Characterization and Optimization of Multiomic Single-Cell Epigenomic Profiling
by: Leticia Sandoval, et al.
Published: (2023-06-01)

Hydrop enables droplet-based single-cell ATAC-seq and single-cell RNA-seq using dissolvable hydrogel beads
by: Florian V De Rop, et al.
Published: (2022-02-01)

Exploring distinct properties of endometrial stem cells through advanced single-cell analysis platforms
by: Jin Woo Lee, et al.
Published: (2023-12-01)

Integrative single-nucleus multi-omics analysis prioritizes candidate cis and trans regulatory networks and their target genes in Alzheimer’s disease brains
by: Julia Gamache, et al.
Published: (2023-10-01)

Discovering Cellular Mitochondrial Heteroplasmy Heterogeneity with Single Cell RNA and ATAC Sequencing
by: Aidan S. Marshall, et al.
Published: (2021-06-01)

Clustering single-cell multimodal omics data with jrSiCKLSNMF
by: Dorothy Ellis, et al.
Published: (2023-06-01)

Epi-Impute: Single-Cell RNA-seq Imputation via Integration with Single-Cell ATAC-seq
by: Mikhail Raevskiy, et al.
Published: (2023-03-01)

Single-Cell Transcriptional and Epigenetic Profiles of Male Breast Cancer Nominate Salient Cancer-Specific Enhancers
by: Hyunsoo Kim, et al.
Published: (2023-08-01)

Emergent dynamics of adult stem cell lineages from single nucleus and single cell RNA-Seq of Drosophila testes
by: Amelie A Raz, et al.
Published: (2023-02-01)

Integrative single-cell RNA-seq and ATAC-seq analysis of myogenic differentiation in pig
by: Shufang Cai, et al.
Published: (2023-02-01)

Benchmarking automated cell type annotation tools for single-cell ATAC-seq data
by: Yuge Wang, et al.
Published: (2022-12-01)

Methods, Challenges and Potentials of Single Cell RNA-seq
by: Daniel Hebenstreit
Published: (2012-11-01)

Multi-omic single cell sequencing: Overview and opportunities for kidney disease therapeutic development
by: Steven Pregizer, et al.
Published: (2023-04-01)

Single-cell analyses reveal cannabidiol rewires tumor microenvironment via inhibiting alternative activation of macrophage and synergizes with anti-PD-1 in colon cancer
by: Xiaofan Sun, et al.
Published: (2023-07-01)

Chromatin accessibility dynamics and single cell RNA-Seq reveal new regulators of regeneration in neural progenitors
by: Anneke Dixie Kakebeen, et al.
Published: (2020-04-01)

CITEViz: interactively classify cell populations in CITE-Seq via a flow cytometry-like gating workflow using R-Shiny
by: Garth L. Kong, et al.
Published: (2024-04-01)

Leveraging Novel Integrated Single-Cell Analyses to Define HIV-1 Latency Reversal
by: Suhui Zhao, et al.
Published: (2021-06-01)

Single‐Cell Transcriptome Atlas and Regulatory Dynamics in Developing Cotton Anthers
by: Yanlong Li, et al.
Published: (2024-01-01)

Atf4 regulates angiogenic differences between alveolar bone and long bone macrophages by regulating M1 polarization, based on single-cell RNA sequencing, RNA-seq and ATAC-seq analysis
by: Lanxin Gu, et al.
Published: (2023-03-01)

Single-Cell Atlas of the <i>Drosophila</i> Leg Disc Identifies a Long Non-Coding RNA in Late Development
by: Joyce Tse, et al.
Published: (2022-06-01)

INTACT vs. FANS for Cell-Type-Specific Nuclei Sorting: A Comprehensive Qualitative and Quantitative Comparison
by: Monika Chanu Chongtham, et al.
Published: (2021-05-01)

Characterizing hedgehog pathway features in senescence associated osteoarthritis through Integrative multi-omics and machine learning analysis
by: Tao Wang, et al.
Published: (2024-02-01)

Bacterial single-cell transcriptomics: Recent technical advances and future applications in dentistry
by: Ji-Hoi Moon, et al.
Published: (2023-12-01)

Insect Insights at the Single-Cell Level: Technologies and Applications
by: Chao Sun, et al.
Published: (2023-12-01)

Understanding Mammalian Hair Follicle Ecosystems by Single-Cell RNA Sequencing
by: Qingbo Zheng, et al.
Published: (2022-09-01)

Evaluating imputation methods for single-cell RNA-seq data
by: Yi Cheng, et al.
Published: (2023-07-01)

Coverage-dependent bias creates the appearance of binary splicing in single cells
by: Carlos F Buen Abad Najar, et al.
Published: (2020-06-01)

Dissociation protocols used for sarcoma tissues bias the transcriptome observed in single-cell and single-nucleus RNA sequencing
by: Danh D. Truong, et al.
Published: (2023-05-01)

Single-Cell RNA Sequencing of Cerebrospinal Fluid as an Advanced Form of Liquid Biopsy for Neurological Disorders
by: Anudeep Yekula, et al.
Published: (2022-06-01)

Identification of cellular heterogeneity and immunogenicity of chondrocytes via single-cell RNA sequencing technique in human osteoarthritis
by: Xinyue Hu, et al.
Published: (2022-09-01)

Comparison of the single-cell and single-nucleus hepatic myeloid landscape within decompensated cirrhosis patients
by: Lukas Van Melkebeke, et al.
Published: (2024-02-01)

Single-cell RNA sequencing and ATAC sequencing identify novel biomarkers for bicuspid aortic valve-associated thoracic aortic aneurysm
by: Xu-Wen Liu, et al.
Published: (2024-04-01)

Integrative Single-Cell RNA-Seq and ATAC-Seq Analysis of Mesenchymal Stem/Stromal Cells Derived from Human Placenta
by: Jinlu Li, et al.
Published: (2022-04-01)

Single-cell ATAC-seq signal extraction and enhancement with SCATE
by: Zhicheng Ji, et al.
Published: (2020-07-01)

Altered and allele-specific open chromatin landscape reveals epigenetic and genetic regulators of innate immunity in COVID-19
by: Bowen Zhang, et al.
Published: (2023-02-01)

Estimating the frequency of multiplets in single-cell RNA sequencing from cell-mixing experiments
by: Jesse D. Bloom
Published: (2018-09-01)

Recommendations of scRNA-seq Differential Gene Expression Analysis Based on Comprehensive Benchmarking
by: Jake Gagnon, et al.
Published: (2022-06-01)

scGWAS: landscape of trait-cell type associations by integrating single-cell transcriptomics-wide and genome-wide association studies
by: Peilin Jia, et al.
Published: (2022-10-01)

Single-cell multi-omics analysis reveals dysfunctional Wnt signaling of spermatogonia in non-obstructive azoospermia
by: Shengjie Zeng, et al.
Published: (2023-06-01)

scANANSE gene regulatory network and motif analysis of single-cell clusters [version 2; peer review: 2 approved]
by: Julian A. Arts, et al.
Published: (2023-11-01)