IMAGE: A New Tool for the Prediction of Transcription Factor Binding Sites
IMAGE is an application tool, based on the vector quantization method, aiding the discovery of nucleotidic sequences corresponding to Transcription Factor binding sites. Starting from the knowledge of regulation regions of a number of co-expressed genes, the software is able to predict the occurrenc...
| Main Authors: | , , , , , |
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| Format: | Article |
| Language: | English |
| Published: |
SAGE Publishing
2008-01-01
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| Series: | Bioinformatics and Biology Insights |
| Online Access: | https://doi.org/10.1177/117793220800200004 |
| _version_ | 1818401482936942592 |
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| author | R. Casilli A. Marongiu S. Melchionna P. Palazzari R. Paparcone V. Rosato |
| author_facet | R. Casilli A. Marongiu S. Melchionna P. Palazzari R. Paparcone V. Rosato |
| author_sort | R. Casilli |
| collection | DOAJ |
| description | IMAGE is an application tool, based on the vector quantization method, aiding the discovery of nucleotidic sequences corresponding to Transcription Factor binding sites. Starting from the knowledge of regulation regions of a number of co-expressed genes, the software is able to predict the occurrence of specific motifs of different lengths (starting from 6 base pairs) with a defined number of punctual mutations. |
| first_indexed | 2024-12-14T07:53:11Z |
| format | Article |
| id | doaj.art-aebf4ea6192b4896be573f50fac086dd |
| institution | Directory Open Access Journal |
| issn | 1177-9322 |
| language | English |
| last_indexed | 2024-12-14T07:53:11Z |
| publishDate | 2008-01-01 |
| publisher | SAGE Publishing |
| record_format | Article |
| series | Bioinformatics and Biology Insights |
| spelling | doaj.art-aebf4ea6192b4896be573f50fac086dd2022-12-21T23:10:38ZengSAGE PublishingBioinformatics and Biology Insights1177-93222008-01-01210.1177/117793220800200004IMAGE: A New Tool for the Prediction of Transcription Factor Binding SitesR. Casilli0A. Marongiu1S. Melchionna2P. Palazzari3R. Paparcone4V. Rosato5 Ylichron Srl, ENEA Casaccia Research Center, Via Anguillarese 301, 00123 S. Maria di Galeria (Italy). ENEA, Portici Research Center, Computing and Networks Service, Via, Vecchio Macello, 80055 Portici (Italy). INFM-SOFT, Department of Physics, University of Rome “La Sapienza”, P.le A. Moro 5, 00186 Roma (Italy). ENEA, Casaccia Research Center, Computing and Modelling Unit, Via Anguillarese 301, 00123 S. Maria di Galeria (Italy). Ylichron Srl, ENEA Casaccia Research Center, Via Anguillarese 301, 00123 S. Maria di Galeria (Italy). ENEA, Casaccia Research Center, Computing and Modelling Unit, Via Anguillarese 301, 00123 S. Maria di Galeria (Italy).IMAGE is an application tool, based on the vector quantization method, aiding the discovery of nucleotidic sequences corresponding to Transcription Factor binding sites. Starting from the knowledge of regulation regions of a number of co-expressed genes, the software is able to predict the occurrence of specific motifs of different lengths (starting from 6 base pairs) with a defined number of punctual mutations.https://doi.org/10.1177/117793220800200004 |
| spellingShingle | R. Casilli A. Marongiu S. Melchionna P. Palazzari R. Paparcone V. Rosato IMAGE: A New Tool for the Prediction of Transcription Factor Binding Sites Bioinformatics and Biology Insights |
| title | IMAGE: A New Tool for the Prediction of Transcription Factor Binding Sites |
| title_full | IMAGE: A New Tool for the Prediction of Transcription Factor Binding Sites |
| title_fullStr | IMAGE: A New Tool for the Prediction of Transcription Factor Binding Sites |
| title_full_unstemmed | IMAGE: A New Tool for the Prediction of Transcription Factor Binding Sites |
| title_short | IMAGE: A New Tool for the Prediction of Transcription Factor Binding Sites |
| title_sort | image a new tool for the prediction of transcription factor binding sites |
| url | https://doi.org/10.1177/117793220800200004 |
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