The complete mitochondrial genome of the subsocial cockroach Nauphoeta cinerea and phylogenomic analyses of Blattodea mitogenomes suggest reclassification of superfamilies
The genome of the subsocial cockroach Nauphoeta cinerea was partially sequenced in one-twelfth of an Illumina HiSeq lane. The mitochondrial genome was assembled using MIRA software, yielding a circular molecule of 15,923 bp in length and deposited in GenBank under the accession number KY212743. As e...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2017-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2017.1285207 |
| _version_ | 1797640891514486784 |
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| author | Ana Teresa Nogueira Dumans Danielle Bertino Grimaldi Carolina Furtado Ednildo de Alcantara Machado Francisco Prosdocimi |
| author_facet | Ana Teresa Nogueira Dumans Danielle Bertino Grimaldi Carolina Furtado Ednildo de Alcantara Machado Francisco Prosdocimi |
| author_sort | Ana Teresa Nogueira Dumans |
| collection | DOAJ |
| description | The genome of the subsocial cockroach Nauphoeta cinerea was partially sequenced in one-twelfth of an Illumina HiSeq lane. The mitochondrial genome was assembled using MIRA software, yielding a circular molecule of 15,923 bp in length and deposited in GenBank under the accession number KY212743. As expected, the mitogenome contained 13 protein-coding genes, 22 transfer tRNAs and 2 ribosomal RNAs. The molecule was assembled using 35,163 sequencing reads of 120 bp each, resulting in ∼286.9× coverage of uniformly distributed reads along the genome. All the 6 complete mitochondrial genomes available for the roaches from the superfamily Blaberoidea were downloaded and compared with the mitogenome of N. cinerea. We also downloaded complete mitochondrial genomes from the superfamily Blattoidea, including 6 mitochondrial genomes of Termitoidae, 2 mitogenomes of Cryptocercoidae and 3 from Blattoidae. A supermatrix dataset presenting the concatenated alignment of all mitochondrial genes was used as input for a maximum likelihood phylogeny. The phylogenomic tree obtained was consistent for most clades, with a relevant exception in the position of the Corydioidea species E. sinensis. Mitochondrial gene information suggests that superfamily Corydioidea should be classified as a clade inside Blattoidea. Nuclear markers and other Corydioidea mitogenomes should be studied to confirm the evolutionary relationships of Blattodea superfamilies. |
| first_indexed | 2024-03-11T13:37:41Z |
| format | Article |
| id | doaj.art-aef73a772b284a8b80d87f63a8988d5b |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:37:41Z |
| publishDate | 2017-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-aef73a772b284a8b80d87f63a8988d5b2023-11-02T15:42:55ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592017-01-0121767810.1080/23802359.2017.12852071285207The complete mitochondrial genome of the subsocial cockroach Nauphoeta cinerea and phylogenomic analyses of Blattodea mitogenomes suggest reclassification of superfamiliesAna Teresa Nogueira Dumans0Danielle Bertino Grimaldi1Carolina Furtado2Ednildo de Alcantara Machado3Francisco Prosdocimi4Universidade Federal do Rio de JaneiroUniversidade Federal do Rio de JaneiroDepartamento de Genética, Instituto Nacional de CancerUniversidade Federal do Rio de JaneiroUniversidade Federal do Rio de JaneiroThe genome of the subsocial cockroach Nauphoeta cinerea was partially sequenced in one-twelfth of an Illumina HiSeq lane. The mitochondrial genome was assembled using MIRA software, yielding a circular molecule of 15,923 bp in length and deposited in GenBank under the accession number KY212743. As expected, the mitogenome contained 13 protein-coding genes, 22 transfer tRNAs and 2 ribosomal RNAs. The molecule was assembled using 35,163 sequencing reads of 120 bp each, resulting in ∼286.9× coverage of uniformly distributed reads along the genome. All the 6 complete mitochondrial genomes available for the roaches from the superfamily Blaberoidea were downloaded and compared with the mitogenome of N. cinerea. We also downloaded complete mitochondrial genomes from the superfamily Blattoidea, including 6 mitochondrial genomes of Termitoidae, 2 mitogenomes of Cryptocercoidae and 3 from Blattoidae. A supermatrix dataset presenting the concatenated alignment of all mitochondrial genes was used as input for a maximum likelihood phylogeny. The phylogenomic tree obtained was consistent for most clades, with a relevant exception in the position of the Corydioidea species E. sinensis. Mitochondrial gene information suggests that superfamily Corydioidea should be classified as a clade inside Blattoidea. Nuclear markers and other Corydioidea mitogenomes should be studied to confirm the evolutionary relationships of Blattodea superfamilies.http://dx.doi.org/10.1080/23802359.2017.1285207nauphoeta cinereamitochondrial genomephylogenomicsblattodeacorydioidea |
| spellingShingle | Ana Teresa Nogueira Dumans Danielle Bertino Grimaldi Carolina Furtado Ednildo de Alcantara Machado Francisco Prosdocimi The complete mitochondrial genome of the subsocial cockroach Nauphoeta cinerea and phylogenomic analyses of Blattodea mitogenomes suggest reclassification of superfamilies Mitochondrial DNA. Part B. Resources nauphoeta cinerea mitochondrial genome phylogenomics blattodea corydioidea |
| title | The complete mitochondrial genome of the subsocial cockroach Nauphoeta cinerea and phylogenomic analyses of Blattodea mitogenomes suggest reclassification of superfamilies |
| title_full | The complete mitochondrial genome of the subsocial cockroach Nauphoeta cinerea and phylogenomic analyses of Blattodea mitogenomes suggest reclassification of superfamilies |
| title_fullStr | The complete mitochondrial genome of the subsocial cockroach Nauphoeta cinerea and phylogenomic analyses of Blattodea mitogenomes suggest reclassification of superfamilies |
| title_full_unstemmed | The complete mitochondrial genome of the subsocial cockroach Nauphoeta cinerea and phylogenomic analyses of Blattodea mitogenomes suggest reclassification of superfamilies |
| title_short | The complete mitochondrial genome of the subsocial cockroach Nauphoeta cinerea and phylogenomic analyses of Blattodea mitogenomes suggest reclassification of superfamilies |
| title_sort | complete mitochondrial genome of the subsocial cockroach nauphoeta cinerea and phylogenomic analyses of blattodea mitogenomes suggest reclassification of superfamilies |
| topic | nauphoeta cinerea mitochondrial genome phylogenomics blattodea corydioidea |
| url | http://dx.doi.org/10.1080/23802359.2017.1285207 |
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