Identification and verification of the ferroptosis- and pyroptosis-associated prognostic signature for low-grade glioma
Accumulating evidence reveals that ferroptosis and pyroptosis play pivotal roles in tumorigenesis of low-grade glioma (LGG). In this research, we aimed to classify molecular subtypes and further identify and verify a novel multigene signature in LGG on the basis of ferroptosis and pyroptosis-relate...
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| Format: | Article |
| Language: | English |
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Association of Basic Medical Sciences of Federation of Bosnia and Herzegovina
2022-09-01
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| Series: | Biomolecules & Biomedicine |
| Subjects: | |
| Online Access: | https://www.bjbms.org/ojs/index.php/bjbms/article/view/6888 |
| _version_ | 1797261314970615808 |
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| author | Jie Wang Jie Ren Jifeng Liu Linyun Zhang Qihang Yuan Bin Dong |
| author_facet | Jie Wang Jie Ren Jifeng Liu Linyun Zhang Qihang Yuan Bin Dong |
| author_sort | Jie Wang |
| collection | DOAJ |
| description |
Accumulating evidence reveals that ferroptosis and pyroptosis play pivotal roles in tumorigenesis of low-grade glioma (LGG). In this research, we aimed to classify molecular subtypes and further identify and verify a novel multigene signature in LGG on the basis of ferroptosis and pyroptosis-related genes (FPRGs). Raw sequencing data and corresponding clinical data of LGG samples retrieved from the TCGA and CGGA databases were obtained for the training and validation datasets. Non-negative matrix factorization (NMF) clustering defined by FPRGs associated with prognosis was performed to classify molecular subtypes of LGG patients. LASSO-SVM-Random Forest analysis was carried out to develop an FPRG signature to predict the survival and benefit of immunotherapy of LGG patients. NMF clustering defined by FPRGs with prognostic values acted to categorize LGG patients into two molecular subtypes with different prognosis, clinical traits and immune microenvironments. A six-FPRG prognostic signature was constructed, accompanied by the optimal p-value. The AUC values of our signature exhibited great prognostic performances. Our signature was superior to other four well-recognized signatures in predicting the survival probability of LGG patients. Immune characteristics, tumor mutation profile, tumor stemness indices, MGMT methylation and immunotherapy response biomarkers showed significant differences between high- and low-risk populations. Finally, a nomogram was created for quantitative prediction of the survival probability of LGG patients, with the AUC values of the nomogram being 0.916, 0.888 and 0.836 for 1-, 3- and 5-year survival, sequentially. Overall, the FPRG signature may function as an effective indicator for the prognosis prediction and immunotherapy response of LGG patients.
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| first_indexed | 2024-04-24T23:39:15Z |
| format | Article |
| id | doaj.art-afc118dcc5fe45fa857f5e09992bb15d |
| institution | Directory Open Access Journal |
| issn | 2831-0896 2831-090X |
| language | English |
| last_indexed | 2024-04-24T23:39:15Z |
| publishDate | 2022-09-01 |
| publisher | Association of Basic Medical Sciences of Federation of Bosnia and Herzegovina |
| record_format | Article |
| series | Biomolecules & Biomedicine |
| spelling | doaj.art-afc118dcc5fe45fa857f5e09992bb15d2024-03-15T13:31:01ZengAssociation of Basic Medical Sciences of Federation of Bosnia and HerzegovinaBiomolecules & Biomedicine2831-08962831-090X2022-09-0122510.17305/bjbms.2021.6888Identification and verification of the ferroptosis- and pyroptosis-associated prognostic signature for low-grade gliomaJie Wang0Jie Ren1Jifeng Liu2Linyun Zhang3Qihang Yuan4https://orcid.org/0000-0001-7516-7620Bin Dong5Department of Neurosurgery, First Affiliated Hospital of Dalian Medical University, Dalian, Liaoning, ChinaDepartment of Oncology, First Affiliated Hospital of Dalian Medical University, Dalian, Liaoning, ChinaDepartment of General Surgery, First Affiliated Hospital of Dalian Medical University, Dalian, Liaoning, ChinaDepartment of Neurosurgery, First Affiliated Hospital of Dalian Medical University, Dalian, Liaoning, ChinaDepartment of General Surgery, First Affiliated Hospital of Dalian Medical University, Dalian, Liaoning, ChinaDepartment of Neurosurgery, First Affiliated Hospital of Dalian Medical University, Dalian, Liaoning, China Accumulating evidence reveals that ferroptosis and pyroptosis play pivotal roles in tumorigenesis of low-grade glioma (LGG). In this research, we aimed to classify molecular subtypes and further identify and verify a novel multigene signature in LGG on the basis of ferroptosis and pyroptosis-related genes (FPRGs). Raw sequencing data and corresponding clinical data of LGG samples retrieved from the TCGA and CGGA databases were obtained for the training and validation datasets. Non-negative matrix factorization (NMF) clustering defined by FPRGs associated with prognosis was performed to classify molecular subtypes of LGG patients. LASSO-SVM-Random Forest analysis was carried out to develop an FPRG signature to predict the survival and benefit of immunotherapy of LGG patients. NMF clustering defined by FPRGs with prognostic values acted to categorize LGG patients into two molecular subtypes with different prognosis, clinical traits and immune microenvironments. A six-FPRG prognostic signature was constructed, accompanied by the optimal p-value. The AUC values of our signature exhibited great prognostic performances. Our signature was superior to other four well-recognized signatures in predicting the survival probability of LGG patients. Immune characteristics, tumor mutation profile, tumor stemness indices, MGMT methylation and immunotherapy response biomarkers showed significant differences between high- and low-risk populations. Finally, a nomogram was created for quantitative prediction of the survival probability of LGG patients, with the AUC values of the nomogram being 0.916, 0.888 and 0.836 for 1-, 3- and 5-year survival, sequentially. Overall, the FPRG signature may function as an effective indicator for the prognosis prediction and immunotherapy response of LGG patients. https://www.bjbms.org/ojs/index.php/bjbms/article/view/6888Ferroptosispyroptosisprognostic signatureimmunotherapylow-grade glioma |
| spellingShingle | Jie Wang Jie Ren Jifeng Liu Linyun Zhang Qihang Yuan Bin Dong Identification and verification of the ferroptosis- and pyroptosis-associated prognostic signature for low-grade glioma Biomolecules & Biomedicine Ferroptosis pyroptosis prognostic signature immunotherapy low-grade glioma |
| title | Identification and verification of the ferroptosis- and pyroptosis-associated prognostic signature for low-grade glioma |
| title_full | Identification and verification of the ferroptosis- and pyroptosis-associated prognostic signature for low-grade glioma |
| title_fullStr | Identification and verification of the ferroptosis- and pyroptosis-associated prognostic signature for low-grade glioma |
| title_full_unstemmed | Identification and verification of the ferroptosis- and pyroptosis-associated prognostic signature for low-grade glioma |
| title_short | Identification and verification of the ferroptosis- and pyroptosis-associated prognostic signature for low-grade glioma |
| title_sort | identification and verification of the ferroptosis and pyroptosis associated prognostic signature for low grade glioma |
| topic | Ferroptosis pyroptosis prognostic signature immunotherapy low-grade glioma |
| url | https://www.bjbms.org/ojs/index.php/bjbms/article/view/6888 |
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