Neoantigen Dendritic Cell Vaccination Combined with Anti-CD38 and CpG Elicits Anti-Tumor Immunity against the Immune Checkpoint Therapy-Resistant Murine Lung Cancer Cell Line LLC1

An important factor associated with primary resistance to immune-checkpoint therapies (ICT) is a “cold” tumor microenvironment (TME), characterized by the absence of T cell infiltration and a non-inflammatory milieu. Whole-exome and RNA sequencing to predict neoantigen expression was performed on th...

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Main Authors: Changbo Sun, Koji Nagaoka, Yukari Kobayashi, Hidewaki Nakagawa, Kazuhiro Kakimi, Jun Nakajima
Format: Article
Language:English
Published: MDPI AG 2021-11-01
Series:Cancers
Subjects:
Online Access:https://www.mdpi.com/2072-6694/13/21/5508
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author Changbo Sun
Koji Nagaoka
Yukari Kobayashi
Hidewaki Nakagawa
Kazuhiro Kakimi
Jun Nakajima
author_facet Changbo Sun
Koji Nagaoka
Yukari Kobayashi
Hidewaki Nakagawa
Kazuhiro Kakimi
Jun Nakajima
author_sort Changbo Sun
collection DOAJ
description An important factor associated with primary resistance to immune-checkpoint therapies (ICT) is a “cold” tumor microenvironment (TME), characterized by the absence of T cell infiltration and a non-inflammatory milieu. Whole-exome and RNA sequencing to predict neoantigen expression was performed on the LLC1 cell line which forms “cold” tumors in mice. Dendritic cell (DC)-based vaccination strategies were developed using candidate neoantigen long peptides (LPs). A total of 2536 missense mutations were identified in LLC1 and of 132 candidate neoantigen short peptides, 25 were found to induce CD8<sup>+</sup> T cell responses. However, they failed to inhibit LLC1 growth when incorporated into a cancer vaccine. In contrast, DCs pulsed with LPs induced CD4<sup>+</sup> and CD8<sup>+</sup> T cell responses and one of them, designated L82, delayed LLC1 growth in vivo. By RNA-Seq, CD38 was highly expressed by LLC1 tumor cells and, therefore, anti-CD38 antibody treatment was combined with L82-pulsed DC vaccination. This combination effectively suppressed tumor growth via a mechanism relying on decreased regulatory T cells in the tumor. This study demonstrated that an appropriate vaccination strategy combining neoantigen peptide-pulsed DC with anti-CD38 antibody can render an ICT-resistant “cold” tumor susceptible to immune rejection via a mechanism involving neutralization of regulatory T cells.
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spelling doaj.art-afe1b4a058b840f4ba974715b3c8fd042023-11-22T20:36:20ZengMDPI AGCancers2072-66942021-11-011321550810.3390/cancers13215508Neoantigen Dendritic Cell Vaccination Combined with Anti-CD38 and CpG Elicits Anti-Tumor Immunity against the Immune Checkpoint Therapy-Resistant Murine Lung Cancer Cell Line LLC1Changbo Sun0Koji Nagaoka1Yukari Kobayashi2Hidewaki Nakagawa3Kazuhiro Kakimi4Jun Nakajima5Department of Immunotherapeutics, The University of Tokyo Hospital, Tokyo 113-8655, JapanDepartment of Immunotherapeutics, The University of Tokyo Hospital, Tokyo 113-8655, JapanDepartment of Immunotherapeutics, The University of Tokyo Hospital, Tokyo 113-8655, JapanLaboratory for Cancer Genomics, RIKEN Center for Integrative Medical Sciences Kanagawa Japan, Yokohama 230-0045, JapanDepartment of Immunotherapeutics, The University of Tokyo Hospital, Tokyo 113-8655, JapanDepartment of Thoracic Surgery, The University of Tokyo Graduate School of Medicine, Tokyo 113-8655, JapanAn important factor associated with primary resistance to immune-checkpoint therapies (ICT) is a “cold” tumor microenvironment (TME), characterized by the absence of T cell infiltration and a non-inflammatory milieu. Whole-exome and RNA sequencing to predict neoantigen expression was performed on the LLC1 cell line which forms “cold” tumors in mice. Dendritic cell (DC)-based vaccination strategies were developed using candidate neoantigen long peptides (LPs). A total of 2536 missense mutations were identified in LLC1 and of 132 candidate neoantigen short peptides, 25 were found to induce CD8<sup>+</sup> T cell responses. However, they failed to inhibit LLC1 growth when incorporated into a cancer vaccine. In contrast, DCs pulsed with LPs induced CD4<sup>+</sup> and CD8<sup>+</sup> T cell responses and one of them, designated L82, delayed LLC1 growth in vivo. By RNA-Seq, CD38 was highly expressed by LLC1 tumor cells and, therefore, anti-CD38 antibody treatment was combined with L82-pulsed DC vaccination. This combination effectively suppressed tumor growth via a mechanism relying on decreased regulatory T cells in the tumor. This study demonstrated that an appropriate vaccination strategy combining neoantigen peptide-pulsed DC with anti-CD38 antibody can render an ICT-resistant “cold” tumor susceptible to immune rejection via a mechanism involving neutralization of regulatory T cells.https://www.mdpi.com/2072-6694/13/21/5508neoantigenDC vaccineimmunotherapycheckpointcombination therapytumor microenvironment
spellingShingle Changbo Sun
Koji Nagaoka
Yukari Kobayashi
Hidewaki Nakagawa
Kazuhiro Kakimi
Jun Nakajima
Neoantigen Dendritic Cell Vaccination Combined with Anti-CD38 and CpG Elicits Anti-Tumor Immunity against the Immune Checkpoint Therapy-Resistant Murine Lung Cancer Cell Line LLC1
Cancers
neoantigen
DC vaccine
immunotherapy
checkpoint
combination therapy
tumor microenvironment
title Neoantigen Dendritic Cell Vaccination Combined with Anti-CD38 and CpG Elicits Anti-Tumor Immunity against the Immune Checkpoint Therapy-Resistant Murine Lung Cancer Cell Line LLC1
title_full Neoantigen Dendritic Cell Vaccination Combined with Anti-CD38 and CpG Elicits Anti-Tumor Immunity against the Immune Checkpoint Therapy-Resistant Murine Lung Cancer Cell Line LLC1
title_fullStr Neoantigen Dendritic Cell Vaccination Combined with Anti-CD38 and CpG Elicits Anti-Tumor Immunity against the Immune Checkpoint Therapy-Resistant Murine Lung Cancer Cell Line LLC1
title_full_unstemmed Neoantigen Dendritic Cell Vaccination Combined with Anti-CD38 and CpG Elicits Anti-Tumor Immunity against the Immune Checkpoint Therapy-Resistant Murine Lung Cancer Cell Line LLC1
title_short Neoantigen Dendritic Cell Vaccination Combined with Anti-CD38 and CpG Elicits Anti-Tumor Immunity against the Immune Checkpoint Therapy-Resistant Murine Lung Cancer Cell Line LLC1
title_sort neoantigen dendritic cell vaccination combined with anti cd38 and cpg elicits anti tumor immunity against the immune checkpoint therapy resistant murine lung cancer cell line llc1
topic neoantigen
DC vaccine
immunotherapy
checkpoint
combination therapy
tumor microenvironment
url https://www.mdpi.com/2072-6694/13/21/5508
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