ParticleChromo3D: a Particle Swarm Optimization algorithm for chromosome 3D structure prediction from Hi-C data

ParticleChromo3D: a Particle Swarm Optimization algorithm for chromosome 3D structure prediction from Hi-C data

Abstract Background The three-dimensional (3D) structure of chromatin has a massive effect on its function. Because of this, it is desirable to have an understanding of the 3D structural organization of chromatin. To gain greater insight into the spatial organization of chromosomes and genomes and t...

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Bibliographic Details
Main Authors: David Vadnais, Michael Middleton, Oluwatosin Oluwadare
Format: Article
Language:English
Published: BMC 2022-09-01
Series:BioData Mining
Subjects:
Hi-C
3D chromosome structure
Particle Swarm Optimization
Chromosome conformation capture
3D genome
Online Access:https://doi.org/10.1186/s13040-022-00305-x

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