Genome of Tenualosa ilisha from the river Padma, Bangladesh
Abstract Objective Hilsa shad (Tenualosa ilisha), is a popular fish of Bangladesh belonging to the Clupeidae family. An anadromous species, like the salmon and many other migratory fish, it is a unique species that lives in the sea and travels to freshwater rivers for spawning. During its entire lif...
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| Format: | Article |
| Language: | English |
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BMC
2018-12-01
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| Series: | BMC Research Notes |
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| Online Access: | http://link.springer.com/article/10.1186/s13104-018-4028-8 |
| _version_ | 1818135787785420800 |
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| author | Avizit Das Peter Ianakiev Abdul Baten Rifath Nehleen Tasneem Ehsan Oly Ahmed Mohammad Riazul Islam M. Niamul Naser Mong Sano Marma Haseena Khan |
| author_facet | Avizit Das Peter Ianakiev Abdul Baten Rifath Nehleen Tasneem Ehsan Oly Ahmed Mohammad Riazul Islam M. Niamul Naser Mong Sano Marma Haseena Khan |
| author_sort | Avizit Das |
| collection | DOAJ |
| description | Abstract Objective Hilsa shad (Tenualosa ilisha), is a popular fish of Bangladesh belonging to the Clupeidae family. An anadromous species, like the salmon and many other migratory fish, it is a unique species that lives in the sea and travels to freshwater rivers for spawning. During its entire life, Tenualosa ilisha migrates both from sea to freshwater and vice versa. Data description The genome of Tenualosa ilisha collected from the river Padma of Rajshahi, Bangladesh has been sequenced and its de novo hybrid assembly and structural annotations are being reported here. Illumina and PacBio sequencing platforms were used for high depth sequencing and the draft genome assembly was found to be 816 MB with N50 size of 188 kb. MAKER gene annotation tool predicted 31,254 gene models. Benchmarking Universal Single-Copy Orthologs refer 95% completeness of the assembled genome. |
| first_indexed | 2024-12-11T09:30:04Z |
| format | Article |
| id | doaj.art-b09a09b160d14b7db620d9190e2a2c89 |
| institution | Directory Open Access Journal |
| issn | 1756-0500 |
| language | English |
| last_indexed | 2024-12-11T09:30:04Z |
| publishDate | 2018-12-01 |
| publisher | BMC |
| record_format | Article |
| series | BMC Research Notes |
| spelling | doaj.art-b09a09b160d14b7db620d9190e2a2c892022-12-22T01:13:03ZengBMCBMC Research Notes1756-05002018-12-011111310.1186/s13104-018-4028-8Genome of Tenualosa ilisha from the river Padma, BangladeshAvizit Das0Peter Ianakiev1Abdul Baten2Rifath Nehleen3Tasneem Ehsan4Oly Ahmed5Mohammad Riazul Islam6M. Niamul Naser7Mong Sano Marma8Haseena Khan9Department of Biochemistry and Molecular Biology, University of DhakaHera Biosciences LLCAgResearch, Grasslands Research CentreDepartment of Biochemistry and Molecular Biology, University of DhakaDepartment of Biochemistry and Molecular Biology, University of DhakaDepartment of Biochemistry and Molecular Biology, University of DhakaDepartment of Biochemistry and Molecular Biology, University of DhakaDepartment of Zoology, University of DhakaQiagen SciencesDepartment of Biochemistry and Molecular Biology, University of DhakaAbstract Objective Hilsa shad (Tenualosa ilisha), is a popular fish of Bangladesh belonging to the Clupeidae family. An anadromous species, like the salmon and many other migratory fish, it is a unique species that lives in the sea and travels to freshwater rivers for spawning. During its entire life, Tenualosa ilisha migrates both from sea to freshwater and vice versa. Data description The genome of Tenualosa ilisha collected from the river Padma of Rajshahi, Bangladesh has been sequenced and its de novo hybrid assembly and structural annotations are being reported here. Illumina and PacBio sequencing platforms were used for high depth sequencing and the draft genome assembly was found to be 816 MB with N50 size of 188 kb. MAKER gene annotation tool predicted 31,254 gene models. Benchmarking Universal Single-Copy Orthologs refer 95% completeness of the assembled genome.http://link.springer.com/article/10.1186/s13104-018-4028-8Hilsa shadTenualosa ilishaClupediaeWhole genome sequenceNGS platform |
| spellingShingle | Avizit Das Peter Ianakiev Abdul Baten Rifath Nehleen Tasneem Ehsan Oly Ahmed Mohammad Riazul Islam M. Niamul Naser Mong Sano Marma Haseena Khan Genome of Tenualosa ilisha from the river Padma, Bangladesh BMC Research Notes Hilsa shad Tenualosa ilisha Clupediae Whole genome sequence NGS platform |
| title | Genome of Tenualosa ilisha from the river Padma, Bangladesh |
| title_full | Genome of Tenualosa ilisha from the river Padma, Bangladesh |
| title_fullStr | Genome of Tenualosa ilisha from the river Padma, Bangladesh |
| title_full_unstemmed | Genome of Tenualosa ilisha from the river Padma, Bangladesh |
| title_short | Genome of Tenualosa ilisha from the river Padma, Bangladesh |
| title_sort | genome of tenualosa ilisha from the river padma bangladesh |
| topic | Hilsa shad Tenualosa ilisha Clupediae Whole genome sequence NGS platform |
| url | http://link.springer.com/article/10.1186/s13104-018-4028-8 |
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