Complete mitochondrial genome of Hypomecis punctinalis Scopoli, 1763 and its phylogenetic position within family Geometridae
Hypomecis punctinalis Scopoli, 1763 belongs to the Lepidopteran family Geometridae. We sequenced the complete mitochondrial genome (mitogenome) of H. punctinalis. The mitogenome is 15,648 bp long and contains a typical set of genes (13 protein-coding genes (PCGs), 22 tRNA genes, and two rRNA genes)...
| Main Authors: | , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2021-10-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2021.1969698 |
| _version_ | 1797638732688392192 |
|---|---|
| author | Yuxuan Sun Jiaxin Wang Fang Li Xingwei Huang Xuexia Geng Jun Li |
| author_facet | Yuxuan Sun Jiaxin Wang Fang Li Xingwei Huang Xuexia Geng Jun Li |
| author_sort | Yuxuan Sun |
| collection | DOAJ |
| description | Hypomecis punctinalis Scopoli, 1763 belongs to the Lepidopteran family Geometridae. We sequenced the complete mitochondrial genome (mitogenome) of H. punctinalis. The mitogenome is 15,648 bp long and contains a typical set of genes (13 protein-coding genes (PCGs), 22 tRNA genes, and two rRNA genes) and a 484 bp AT-rich region. All PCGs start with ATN codons and stop at TAA codon except for cox1 using CGA as initiation codon and nad4 and nad5 using incomplete termination codon T. Within the mitogenome, 17 intergenic spacers and seven overlaps are founded. The intergenic nucleotides are 294 bp in total and two longest intervals locate between trnGln and nad2 as well as trnCys and trnTyr. The overlap nucleotides are 47 bp in total and the maximum overlap lies between cox2 and trnLys. The AT-rich region of the mitogenome contains an ‘ATAGA + polyT’ motif, three copies of 30-bp-repeat and a short polyA tail. The phylogenetic tree shows the relationships of four subfamilies of Geometridae are (((Ennominae + Geometrinae)+Larentiinae)+Sterrhinae)) and the relationships within subfamily Ennominae are ((((Erannis+Biston)+(Jankowskia+(Hypomecis+(Apocheima+Milionia))))+Ectropis)+Abraxas)+Phthonandria)+Celenna). |
| first_indexed | 2024-03-11T13:07:47Z |
| format | Article |
| id | doaj.art-b151861f1d684723abf770e336dc2b78 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:07:47Z |
| publishDate | 2021-10-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-b151861f1d684723abf770e336dc2b782023-11-03T14:28:30ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592021-10-016102910291210.1080/23802359.2021.19696981969698Complete mitochondrial genome of Hypomecis punctinalis Scopoli, 1763 and its phylogenetic position within family GeometridaeYuxuan Sun0Jiaxin Wang1Fang Li2Xingwei Huang3Xuexia Geng4Jun Li5College of Life Science, Huaibei Normal UniversityCollege of Life Science, Huaibei Normal UniversityCollege of Life Science, Huaibei Normal UniversityCollege of Life Science, Huaibei Normal UniversityCollege of Life Science, Huaibei Normal UniversityCollege of Life Science, Huaibei Normal UniversityHypomecis punctinalis Scopoli, 1763 belongs to the Lepidopteran family Geometridae. We sequenced the complete mitochondrial genome (mitogenome) of H. punctinalis. The mitogenome is 15,648 bp long and contains a typical set of genes (13 protein-coding genes (PCGs), 22 tRNA genes, and two rRNA genes) and a 484 bp AT-rich region. All PCGs start with ATN codons and stop at TAA codon except for cox1 using CGA as initiation codon and nad4 and nad5 using incomplete termination codon T. Within the mitogenome, 17 intergenic spacers and seven overlaps are founded. The intergenic nucleotides are 294 bp in total and two longest intervals locate between trnGln and nad2 as well as trnCys and trnTyr. The overlap nucleotides are 47 bp in total and the maximum overlap lies between cox2 and trnLys. The AT-rich region of the mitogenome contains an ‘ATAGA + polyT’ motif, three copies of 30-bp-repeat and a short polyA tail. The phylogenetic tree shows the relationships of four subfamilies of Geometridae are (((Ennominae + Geometrinae)+Larentiinae)+Sterrhinae)) and the relationships within subfamily Ennominae are ((((Erannis+Biston)+(Jankowskia+(Hypomecis+(Apocheima+Milionia))))+Ectropis)+Abraxas)+Phthonandria)+Celenna).http://dx.doi.org/10.1080/23802359.2021.1969698mitochondrial genomelepidopterageometridaehypomecis |
| spellingShingle | Yuxuan Sun Jiaxin Wang Fang Li Xingwei Huang Xuexia Geng Jun Li Complete mitochondrial genome of Hypomecis punctinalis Scopoli, 1763 and its phylogenetic position within family Geometridae Mitochondrial DNA. Part B. Resources mitochondrial genome lepidoptera geometridae hypomecis |
| title | Complete mitochondrial genome of Hypomecis punctinalis Scopoli, 1763 and its phylogenetic position within family Geometridae |
| title_full | Complete mitochondrial genome of Hypomecis punctinalis Scopoli, 1763 and its phylogenetic position within family Geometridae |
| title_fullStr | Complete mitochondrial genome of Hypomecis punctinalis Scopoli, 1763 and its phylogenetic position within family Geometridae |
| title_full_unstemmed | Complete mitochondrial genome of Hypomecis punctinalis Scopoli, 1763 and its phylogenetic position within family Geometridae |
| title_short | Complete mitochondrial genome of Hypomecis punctinalis Scopoli, 1763 and its phylogenetic position within family Geometridae |
| title_sort | complete mitochondrial genome of hypomecis punctinalis scopoli 1763 and its phylogenetic position within family geometridae |
| topic | mitochondrial genome lepidoptera geometridae hypomecis |
| url | http://dx.doi.org/10.1080/23802359.2021.1969698 |
| work_keys_str_mv | AT yuxuansun completemitochondrialgenomeofhypomecispunctinalisscopoli1763anditsphylogeneticpositionwithinfamilygeometridae AT jiaxinwang completemitochondrialgenomeofhypomecispunctinalisscopoli1763anditsphylogeneticpositionwithinfamilygeometridae AT fangli completemitochondrialgenomeofhypomecispunctinalisscopoli1763anditsphylogeneticpositionwithinfamilygeometridae AT xingweihuang completemitochondrialgenomeofhypomecispunctinalisscopoli1763anditsphylogeneticpositionwithinfamilygeometridae AT xuexiageng completemitochondrialgenomeofhypomecispunctinalisscopoli1763anditsphylogeneticpositionwithinfamilygeometridae AT junli completemitochondrialgenomeofhypomecispunctinalisscopoli1763anditsphylogeneticpositionwithinfamilygeometridae |