Genome-Wide Identification, Evolutionary Patterns, and Expression Analysis of <i>bZIP</i> Gene Family in Olive (<i>Olea europaea</i> L.)

Olive (<i>Olea europaea</i>.L) is an economically important oleaginous crop and its fruit cold-pressed oil is used for edible oil all over the world. The basic region-leucine zipper (<i>bZIP</i>) family is one of the largest transcription factors families among eukaryotic org...

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Bibliographic Details
Main Authors: Siyu Rong, Zhiyang Wu, Zizhang Cheng, Shan Zhang, Huan Liu, Qianming Huang
Format: Article
Language:English
Published: MDPI AG 2020-05-01
Series:Genes
Subjects:
Online Access:https://www.mdpi.com/2073-4425/11/5/510
Description
Summary:Olive (<i>Olea europaea</i>.L) is an economically important oleaginous crop and its fruit cold-pressed oil is used for edible oil all over the world. The basic region-leucine zipper (<i>bZIP</i>) family is one of the largest transcription factors families among eukaryotic organisms; its members play vital roles in environmental signaling, stress response, plant growth, seed maturation, and fruit development. However, a comprehensive report on the <i>bZIP</i> gene family in olive is lacking. In this study, 103 <i>OebZIP</i> genes from the olive genome were identified and divided into 12 subfamilies according to their genetic relationship with 78 bZIPs of <i>A. thaliana</i>. Most <i>OebZIP</i> genes are clustered in the subgroup that has a similar gene structure and conserved motif distribution. According to the characteristics of the leucine zipper region, the dimerization characteristics of 103 OebZIP proteins were predicted. Gene duplication analyses revealed that 22 <i>OebZIP</i> genes were involved in the expansion of the <i>bZIP</i> family. To evaluate the expression patterns of <i>OebZIP</i> genes, RNA-seq data available in public databases were analyzed. The highly expressed <i>OebZIP</i> genes and several lipid synthesis genes (<i>LPGs</i>) in fruits of two varieties with different oil contents during the fast oil accumulation stage were examined via qRT-PCR. By comparing the dynamic changes of oil accumulation, <i>OebZIP1</i>, <i>OebZIP7</i>, <i>OebZIP22</i>, and <i>OebZIP99</i> were shown to have a close relationship with fruit development and lipid synthesis. Additionally, some <i>OebZIP</i> had a significant positive correlation with various <i>LPG</i> genes. This study gives insights into the structural features, evolutionary patterns, and expression analysis, laying a foundation to further reveal the function of the 103 <i>OebZIP</i> genes in olive.
ISSN:2073-4425