A magnetic resonance image based atlas of the rabbit brain for automatic parcellation.
Rabbit brain has been used in several works for the analysis of neurodevelopment. However, there are not specific digital rabbit brain atlases that allow an automatic identification of brain regions, which is a crucial step for various neuroimage analyses, and, instead, manual delineation of areas o...
| Main Authors: | , , , , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Public Library of Science (PLoS)
2013-01-01
|
| Series: | PLoS ONE |
| Online Access: | https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23844007/pdf/?tool=EBI |
| _version_ | 1818701581394116608 |
|---|---|
| author | Emma Muñoz-Moreno Ariadna Arbat-Plana Dafnis Batalle Guadalupe Soria Miriam Illa Alberto Prats-Galino Elisenda Eixarch Eduard Gratacos |
| author_facet | Emma Muñoz-Moreno Ariadna Arbat-Plana Dafnis Batalle Guadalupe Soria Miriam Illa Alberto Prats-Galino Elisenda Eixarch Eduard Gratacos |
| author_sort | Emma Muñoz-Moreno |
| collection | DOAJ |
| description | Rabbit brain has been used in several works for the analysis of neurodevelopment. However, there are not specific digital rabbit brain atlases that allow an automatic identification of brain regions, which is a crucial step for various neuroimage analyses, and, instead, manual delineation of areas of interest must be performed in order to evaluate a specific structure. For this reason, we propose an atlas of the rabbit brain based on magnetic resonance imaging, including both structural and diffusion weighted, that can be used for the automatic parcellation of the rabbit brain. Ten individual atlases, as well as an average template and probabilistic maps of the anatomical regions were built. In addition, an example of automatic segmentation based on this atlas is described. |
| first_indexed | 2024-12-17T15:23:07Z |
| format | Article |
| id | doaj.art-b278a61de7154aed996a4268bd78614a |
| institution | Directory Open Access Journal |
| issn | 1932-6203 |
| language | English |
| last_indexed | 2024-12-17T15:23:07Z |
| publishDate | 2013-01-01 |
| publisher | Public Library of Science (PLoS) |
| record_format | Article |
| series | PLoS ONE |
| spelling | doaj.art-b278a61de7154aed996a4268bd78614a2022-12-21T21:43:21ZengPublic Library of Science (PLoS)PLoS ONE1932-62032013-01-0187e6741810.1371/journal.pone.0067418A magnetic resonance image based atlas of the rabbit brain for automatic parcellation.Emma Muñoz-MorenoAriadna Arbat-PlanaDafnis BatalleGuadalupe SoriaMiriam IllaAlberto Prats-GalinoElisenda EixarchEduard GratacosRabbit brain has been used in several works for the analysis of neurodevelopment. However, there are not specific digital rabbit brain atlases that allow an automatic identification of brain regions, which is a crucial step for various neuroimage analyses, and, instead, manual delineation of areas of interest must be performed in order to evaluate a specific structure. For this reason, we propose an atlas of the rabbit brain based on magnetic resonance imaging, including both structural and diffusion weighted, that can be used for the automatic parcellation of the rabbit brain. Ten individual atlases, as well as an average template and probabilistic maps of the anatomical regions were built. In addition, an example of automatic segmentation based on this atlas is described.https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23844007/pdf/?tool=EBI |
| spellingShingle | Emma Muñoz-Moreno Ariadna Arbat-Plana Dafnis Batalle Guadalupe Soria Miriam Illa Alberto Prats-Galino Elisenda Eixarch Eduard Gratacos A magnetic resonance image based atlas of the rabbit brain for automatic parcellation. PLoS ONE |
| title | A magnetic resonance image based atlas of the rabbit brain for automatic parcellation. |
| title_full | A magnetic resonance image based atlas of the rabbit brain for automatic parcellation. |
| title_fullStr | A magnetic resonance image based atlas of the rabbit brain for automatic parcellation. |
| title_full_unstemmed | A magnetic resonance image based atlas of the rabbit brain for automatic parcellation. |
| title_short | A magnetic resonance image based atlas of the rabbit brain for automatic parcellation. |
| title_sort | magnetic resonance image based atlas of the rabbit brain for automatic parcellation |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23844007/pdf/?tool=EBI |
| work_keys_str_mv | AT emmamunozmoreno amagneticresonanceimagebasedatlasoftherabbitbrainforautomaticparcellation AT ariadnaarbatplana amagneticresonanceimagebasedatlasoftherabbitbrainforautomaticparcellation AT dafnisbatalle amagneticresonanceimagebasedatlasoftherabbitbrainforautomaticparcellation AT guadalupesoria amagneticresonanceimagebasedatlasoftherabbitbrainforautomaticparcellation AT miriamilla amagneticresonanceimagebasedatlasoftherabbitbrainforautomaticparcellation AT albertopratsgalino amagneticresonanceimagebasedatlasoftherabbitbrainforautomaticparcellation AT elisendaeixarch amagneticresonanceimagebasedatlasoftherabbitbrainforautomaticparcellation AT eduardgratacos amagneticresonanceimagebasedatlasoftherabbitbrainforautomaticparcellation AT emmamunozmoreno magneticresonanceimagebasedatlasoftherabbitbrainforautomaticparcellation AT ariadnaarbatplana magneticresonanceimagebasedatlasoftherabbitbrainforautomaticparcellation AT dafnisbatalle magneticresonanceimagebasedatlasoftherabbitbrainforautomaticparcellation AT guadalupesoria magneticresonanceimagebasedatlasoftherabbitbrainforautomaticparcellation AT miriamilla magneticresonanceimagebasedatlasoftherabbitbrainforautomaticparcellation AT albertopratsgalino magneticresonanceimagebasedatlasoftherabbitbrainforautomaticparcellation AT elisendaeixarch magneticresonanceimagebasedatlasoftherabbitbrainforautomaticparcellation AT eduardgratacos magneticresonanceimagebasedatlasoftherabbitbrainforautomaticparcellation |