The plastid genome of a tropical tree Alseodaphne petiolaris (Lauraceae)
Alseodaphne petiolaris Hook.f. is a valuable timber tree of the genus Alseodaphne Nees in the family Lauraceae. To better determine its phylogenetic location with respect to the other Alseodaphne species, the complete plastid genome of A. petiolaris was sequenced. The whole plastome is 152,986 bp in...
| Main Authors: | , , , , |
|---|---|
| Format: | Article |
| Language: | English |
| Published: |
Taylor & Francis Group
2019-07-01
|
| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2019.1676178 |
| _version_ | 1797639663981166592 |
|---|---|
| author | Rongjie Zhu Yu Song Guanfei Zhao Jie Yang Xilong Wang |
| author_facet | Rongjie Zhu Yu Song Guanfei Zhao Jie Yang Xilong Wang |
| author_sort | Rongjie Zhu |
| collection | DOAJ |
| description | Alseodaphne petiolaris Hook.f. is a valuable timber tree of the genus Alseodaphne Nees in the family Lauraceae. To better determine its phylogenetic location with respect to the other Alseodaphne species, the complete plastid genome of A. petiolaris was sequenced. The whole plastome is 152,986 bp in length, consisting of a pair of inverted repeat (IR) regions of 20,108 bp, one large single copy (LSC) region of 93,863 bp, and one small single copy (SSC) region of 18,907 bp. The overall GC content of the whole plastome is 39.1%. Further, maximum-likelihood phylogenetic analyse was conducted using 15 complete plastomes of the Lauraceae, which support the close relationship between A. petiolaris and the species of Machilus and Phoebe. |
| first_indexed | 2024-03-11T13:19:50Z |
| format | Article |
| id | doaj.art-b326c651e51948578e87f95604baa0fc |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:19:50Z |
| publishDate | 2019-07-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-b326c651e51948578e87f95604baa0fc2023-11-03T10:38:49ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-07-01423544354510.1080/23802359.2019.16761781676178The plastid genome of a tropical tree Alseodaphne petiolaris (Lauraceae)Rongjie Zhu0Yu Song1Guanfei Zhao2Jie Yang3Xilong Wang4Tibet Academy of Agricultural and Animal Husbandry SciencesXishuangbanna Tropical Botanical Garden, Chinese Academy of SciencesTibet Academy of Agricultural and Animal Husbandry SciencesTibet Academy of Agricultural and Animal Husbandry SciencesTibet Plateau Institute of BiologyAlseodaphne petiolaris Hook.f. is a valuable timber tree of the genus Alseodaphne Nees in the family Lauraceae. To better determine its phylogenetic location with respect to the other Alseodaphne species, the complete plastid genome of A. petiolaris was sequenced. The whole plastome is 152,986 bp in length, consisting of a pair of inverted repeat (IR) regions of 20,108 bp, one large single copy (LSC) region of 93,863 bp, and one small single copy (SSC) region of 18,907 bp. The overall GC content of the whole plastome is 39.1%. Further, maximum-likelihood phylogenetic analyse was conducted using 15 complete plastomes of the Lauraceae, which support the close relationship between A. petiolaris and the species of Machilus and Phoebe.http://dx.doi.org/10.1080/23802359.2019.1676178alseodaphnechloroplast genomephylogenetic analysis |
| spellingShingle | Rongjie Zhu Yu Song Guanfei Zhao Jie Yang Xilong Wang The plastid genome of a tropical tree Alseodaphne petiolaris (Lauraceae) Mitochondrial DNA. Part B. Resources alseodaphne chloroplast genome phylogenetic analysis |
| title | The plastid genome of a tropical tree Alseodaphne petiolaris (Lauraceae) |
| title_full | The plastid genome of a tropical tree Alseodaphne petiolaris (Lauraceae) |
| title_fullStr | The plastid genome of a tropical tree Alseodaphne petiolaris (Lauraceae) |
| title_full_unstemmed | The plastid genome of a tropical tree Alseodaphne petiolaris (Lauraceae) |
| title_short | The plastid genome of a tropical tree Alseodaphne petiolaris (Lauraceae) |
| title_sort | plastid genome of a tropical tree alseodaphne petiolaris lauraceae |
| topic | alseodaphne chloroplast genome phylogenetic analysis |
| url | http://dx.doi.org/10.1080/23802359.2019.1676178 |
| work_keys_str_mv | AT rongjiezhu theplastidgenomeofatropicaltreealseodaphnepetiolarislauraceae AT yusong theplastidgenomeofatropicaltreealseodaphnepetiolarislauraceae AT guanfeizhao theplastidgenomeofatropicaltreealseodaphnepetiolarislauraceae AT jieyang theplastidgenomeofatropicaltreealseodaphnepetiolarislauraceae AT xilongwang theplastidgenomeofatropicaltreealseodaphnepetiolarislauraceae AT rongjiezhu plastidgenomeofatropicaltreealseodaphnepetiolarislauraceae AT yusong plastidgenomeofatropicaltreealseodaphnepetiolarislauraceae AT guanfeizhao plastidgenomeofatropicaltreealseodaphnepetiolarislauraceae AT jieyang plastidgenomeofatropicaltreealseodaphnepetiolarislauraceae AT xilongwang plastidgenomeofatropicaltreealseodaphnepetiolarislauraceae |