The complete chloroplast genome sequences of Pinus sibirica Du Tour
The complete nucleotide sequence of Pinus sibirica Du Tour chloroplast genome (cp DNA) was determined in this study. The cpDNA was 116,635 bp in length, containing a pair of 473 bp inverted repeat (IR) regions (IRa and IRb), which were separated by large and small single-copy regions (LSC and SSC) o...
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2019-01-01
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| Series: | Mitochondrial DNA. Part B. Resources |
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| Online Access: | http://dx.doi.org/10.1080/23802359.2018.1542983 |
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| author | O. A. Baturina A. E. Tupikin S. N. Goroshkevich E. A. Petrova M. R. Kabilov |
| author_facet | O. A. Baturina A. E. Tupikin S. N. Goroshkevich E. A. Petrova M. R. Kabilov |
| author_sort | O. A. Baturina |
| collection | DOAJ |
| description | The complete nucleotide sequence of Pinus sibirica Du Tour chloroplast genome (cp DNA) was determined in this study. The cpDNA was 116,635 bp in length, containing a pair of 473 bp inverted repeat (IR) regions (IRa and IRb), which were separated by large and small single-copy regions (LSC and SSC) of 63,908 and 51,781 bp, respectively. The cpDNA contained 113 genes, including 81 protein-coding genes, 4 ribosomal RNA genes, and 28 tRNA genes. The majority of these genes were single copy genes, while 4 genes existed as double copies, including 2 protein-coding genes (psbA and ycf2), 2 tRNA genes (trnAP and trnS). The overall GC content of P. sibirica cpDNA is 38.7%, while the corresponding values of the LSC, SSC, and IR regions are 38.0, 39.7, and 37.8%, respectively. The phylogenetic analysis confirmed clusterization of P. sibirica in Strobus subgenus. |
| first_indexed | 2024-03-11T13:33:46Z |
| format | Article |
| id | doaj.art-b344da9be58443d0ae2b8624d626754b |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:33:46Z |
| publishDate | 2019-01-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-b344da9be58443d0ae2b8624d626754b2023-11-02T16:07:23ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592019-01-014128628710.1080/23802359.2018.15429831542983The complete chloroplast genome sequences of Pinus sibirica Du TourO. A. Baturina0A. E. Tupikin1S. N. Goroshkevich2E. A. Petrova3M. R. Kabilov4Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of SciencesInstitute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of SciencesInstitute of Monitoring of Climatic and Ecological Systems, Siberian Branch of the Russian Academy of SciencesInstitute of Monitoring of Climatic and Ecological Systems, Siberian Branch of the Russian Academy of SciencesInstitute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of SciencesThe complete nucleotide sequence of Pinus sibirica Du Tour chloroplast genome (cp DNA) was determined in this study. The cpDNA was 116,635 bp in length, containing a pair of 473 bp inverted repeat (IR) regions (IRa and IRb), which were separated by large and small single-copy regions (LSC and SSC) of 63,908 and 51,781 bp, respectively. The cpDNA contained 113 genes, including 81 protein-coding genes, 4 ribosomal RNA genes, and 28 tRNA genes. The majority of these genes were single copy genes, while 4 genes existed as double copies, including 2 protein-coding genes (psbA and ycf2), 2 tRNA genes (trnAP and trnS). The overall GC content of P. sibirica cpDNA is 38.7%, while the corresponding values of the LSC, SSC, and IR regions are 38.0, 39.7, and 37.8%, respectively. The phylogenetic analysis confirmed clusterization of P. sibirica in Strobus subgenus.http://dx.doi.org/10.1080/23802359.2018.1542983chloroplast genomepinus sibiricataiga |
| spellingShingle | O. A. Baturina A. E. Tupikin S. N. Goroshkevich E. A. Petrova M. R. Kabilov The complete chloroplast genome sequences of Pinus sibirica Du Tour Mitochondrial DNA. Part B. Resources chloroplast genome pinus sibirica taiga |
| title | The complete chloroplast genome sequences of Pinus sibirica Du Tour |
| title_full | The complete chloroplast genome sequences of Pinus sibirica Du Tour |
| title_fullStr | The complete chloroplast genome sequences of Pinus sibirica Du Tour |
| title_full_unstemmed | The complete chloroplast genome sequences of Pinus sibirica Du Tour |
| title_short | The complete chloroplast genome sequences of Pinus sibirica Du Tour |
| title_sort | complete chloroplast genome sequences of pinus sibirica du tour |
| topic | chloroplast genome pinus sibirica taiga |
| url | http://dx.doi.org/10.1080/23802359.2018.1542983 |
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