NeuroRetriever: Automatic Neuron Segmentation for Connectome Assembly

NeuroRetriever: Automatic Neuron Segmentation for Connectome Assembly

Segmenting individual neurons from a large number of noisy raw images is the first step in building a comprehensive map of neuron-to-neuron connections for predicting information flow in the brain. Thousands of fluorescence-labeled brain neurons have been imaged. However, mapping a complete connecto...

Full description

Bibliographic Details
Main Authors:	Chi-Tin Shih, Nan-Yow Chen, Ting-Yuan Wang, Guan-Wei He, Guo-Tzau Wang, Yen-Jen Lin, Ting-Kuo Lee, Ann-Shyn Chiang
Format:	Article
Language:	English
Published:	Frontiers Media S.A. 2021-07-01
Series:	Frontiers in Systems Neuroscience
Subjects:	neuroimage processing drosophila segmenation tracing connectome
Online Access:	https://www.frontiersin.org/articles/10.3389/fnsys.2021.687182/full

Similar Items

A Single-Cell Level and Connectome-Derived Computational Model of the Drosophila Brain
by: Yu-Chi Huang, et al.
Published: (2019-01-01)

Q&A: Why use synchrotron x-ray tomography for multi-scale connectome mapping?
by: Yeukuang Hwu, et al.
Published: (2017-12-01)

Untangling the Tauopathy for Alzheimer’s disease and parkinsonism
by: Hui-Yun Chang, et al.
Published: (2018-07-01)

High-throughput computer method for 3D neuronal structure reconstruction from the image stack of the Drosophila brain and its applications.
by: Ping-Chang Lee, et al.
Published: (2012-01-01)

Sparse-view synchrotron X-ray tomographic reconstruction with learning-based sinogram synthesis
by: Chang-Chieh Cheng, et al.
Published: (2023-11-01)

Octopamine neuromodulatory effects on a social behavior decision-making network in Drosophila males.
by: Sarah J Certel, et al.
Published: (2010-10-01)

All-Optical Volumetric Physiology for Connectomics in Dense Neuronal Structures
by: Chiao Huang, et al.
Published: (2019-12-01)

Analog CMOS Voltage Controlled Oscillator (VCO) in Phase Locked Loop (PLL) /
by: 226079 Khaw, Vern Shyn
Published: (2005)

Web based market research methodology for unmet customer needs : estimating cost functions for design pallet
by: Chen, Shyn-Ren, 1971-
Published: (2014)

A subset of cholinergic mushroom body neurons blocks long-term memory formation in Drosophila
by: Chun-Chao Chen, et al.
Published: (2023-08-01)

Imaging through the Whole Brain of Drosophila at λ/20 Super-resolution
by: Han-Yuan Lin, et al.
Published: (2019-04-01)

Additive Expression of Consolidated Memory through Drosophila Mushroom Body Subsets.
by: Chu-Huai Yang, et al.
Published: (2016-05-01)

Selection of motor programs for suppressing food intake and inducing locomotion in the Drosophila brain.
by: Andreas Schoofs, et al.
Published: (2014-06-01)

Empirical Measurement of Client Contribution for Federated Learning With Data Size Diversification
by: Sung Kuk Shyn, et al.
Published: (2022-01-01)

Three-dimensional contact analysis of coupled surfaces by a novel contact transformation method based on localized Lagrange multipliers
by: Yi-Tsung Lin, et al.
Published: (2016-04-01)

Intention to Vaccinate against COVID-19 in Adolescents: A Systematic Review
by: Shyn Yi Tan, et al.
Published: (2023-08-01)

Dietary grape extract can, at an appropriate level, improve the growth performance and antioxidant activity of the white shrimp Litopenaeus vannamei
by: Angela Chien, et al.
Published: (2023-03-01)

Optimized connectome architecture for sensory-motor integration
by: Jacob C. Worrell, et al.
Published: (2017-12-01)

Dihydroceramide desaturase promotes the formation of intraluminal vesicles and inhibits autophagy to increase exosome production
by: Chen-Yi Wu, et al.
Published: (2021-12-01)

Pathogenic VCP/TER94 alleles are dominant actives and contribute to neurodegeneration by altering cellular ATP level in a Drosophila IBMPFD model.
by: Ya-Chu Chang, et al.
Published: (2011-02-01)

Untapped Neuroimaging Tools for Neuro-Oncology: Connectomics and Spatial Transcriptomics
by: Jurgen Germann, et al.
Published: (2022-01-01)

The optimal dietary level of dry grape extract and its effect on the growth performance and antioxidant activity of the white shrimp Litopenaeus vannamei
by: Angela Chien, et al.
Published: (2023-04-01)

Micapipe: A pipeline for multimodal neuroimaging and connectome analysis
by: Raúl R. Cruces, et al.
Published: (2022-11-01)

Information flow, cell types and stereotypy in a full olfactory connectome
by: Philipp Schlegel, et al.
Published: (2021-05-01)

Comparative connectomics of the primate social brain
by: Chihiro Yokoyama, et al.
Published: (2021-12-01)

Neuroinformatics challenges to the structural, connectomic, functional and electrophysiological multimodal imaging of human traumatic brain injury
by: S.Y. Matthew Goh, et al.
Published: (2014-02-01)

Editorial: Cognitive-related and connectome-based biomarkers for depression: the application of state-of-the-art techniques and models to uncover
by: Zhiyi Chen, et al.
Published: (2023-07-01)

CT-guided percutaneous cryoablation of central lung tumors
by: Errol Colak, et al.
Published: (2014-07-01)

An expanding manifold in transmodal regions characterizes adolescent reconfiguration of structural connectome organization
by: Bo-yong Park, et al.
Published: (2021-03-01)

En bloc preparation of Drosophila brains enables high-throughput FIB-SEM connectomics
by: Zhiyuan Lu, et al.
Published: (2022-12-01)

rest2vec: Vectorizing the resting-state functional connectome using graph embedding
by: Zachery D. Morrissey, et al.
Published: (2021-02-01)

Neuropeptide F inhibits dopamine neuron interference of long-term memory consolidation in Drosophila
by: Kuan-Lin Feng, et al.
Published: (2021-12-01)

The Connectome and Chemo-Connectome Databases for Mice Brain Connection Analysis
by: Yang Wang, et al.
Published: (2022-06-01)

Indoor Air Quality And Potential Health Risks In The Food Refinery In The Hot-Humid Tropics
by: Wong, Chiang Ann
Published: (2018)

The application of a mathematical model linking structural and functional connectomes in severe brain injury
by: A. Kuceyeski, et al.
Published: (2016-01-01)

Large, open datasets for human connectomics research: Considerations for reproducible and responsible data use
by: Angela R. Laird
Published: (2021-12-01)

Periprocedural factors associated with overall patient survival following percutaneous image-guided liver tumor cryoablation
by: Dania Daye, et al.
Published: (2022-01-01)

Tracing neuronal circuits in transgenic animals by transneuronal control of transcription (TRACT)
by: Ting-hao Huang, et al.
Published: (2017-12-01)

Ontology-based approach for in vivo human connectomics: the medial Brodmann area 6 case study
by: Tristan eMoreau, et al.
Published: (2015-04-01)

Improving Grammar Mastery through Movie Segment for the Fourth Semester of English Students academic year 2018/2019 at Madura Islamic University
by: arisandi setiyawan
Published: (2019-11-01)