The complete chloroplast genome sequence of Begonia arachnoidea (Begoniaceae)
There are more than 2035 Begonia species (Begoniaceae) reported currently in the world. Begonia arachnoidea was found as a new species within a small area in Southern China. In this study, we are reporting for the first time its chloroplast genome for the purpose to compare with the chloroplast geno...
| Main Authors: | , , , , , , |
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| Format: | Article |
| Language: | English |
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Taylor & Francis Group
2022-06-01
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| Series: | Mitochondrial DNA. Part B. Resources |
| Subjects: | |
| Online Access: | http://dx.doi.org/10.1080/23802359.2022.2087548 |
| _version_ | 1827772187936817152 |
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| author | Da-Yan Tao Hai-Xia Yan Jin-Ye Zhou Jian-Bo Rong Qian Song Shi-Kai Guan Shuming Luo |
| author_facet | Da-Yan Tao Hai-Xia Yan Jin-Ye Zhou Jian-Bo Rong Qian Song Shi-Kai Guan Shuming Luo |
| author_sort | Da-Yan Tao |
| collection | DOAJ |
| description | There are more than 2035 Begonia species (Begoniaceae) reported currently in the world. Begonia arachnoidea was found as a new species within a small area in Southern China. In this study, we are reporting for the first time its chloroplast genome for the purpose to compare with the chloroplast genomic data from other plant taxa which were closely related to this new species. Our results show that the circular chloroplast genome of B. arachnoidea is 169,725 bp in length, with 35.49% GC content. The whole structure of the genome has 76,431 bp in a large single-copy (LSC) region, 18,146 bp in a small single-copy (SSC) region, and the two inverted repeat (IRs) regions are both 37,574 bp. There are 90 protein-coding genes, 8 rRNA genes, and 42 tRNA genes encoded in this genome. Final phylogenetic analysis revealed that B. arachnoidea is genetically closest to B. pulchrifolia and B. coptidifolia. |
| first_indexed | 2024-03-11T13:05:47Z |
| format | Article |
| id | doaj.art-b3d5ea2e4265433c9fd34ba01681fce6 |
| institution | Directory Open Access Journal |
| issn | 2380-2359 |
| language | English |
| last_indexed | 2024-03-11T13:05:47Z |
| publishDate | 2022-06-01 |
| publisher | Taylor & Francis Group |
| record_format | Article |
| series | Mitochondrial DNA. Part B. Resources |
| spelling | doaj.art-b3d5ea2e4265433c9fd34ba01681fce62023-11-03T14:36:04ZengTaylor & Francis GroupMitochondrial DNA. Part B. Resources2380-23592022-06-01761106110810.1080/23802359.2022.20875482087548The complete chloroplast genome sequence of Begonia arachnoidea (Begoniaceae)Da-Yan Tao0Hai-Xia Yan1Jin-Ye Zhou2Jian-Bo Rong3Qian Song4Shi-Kai Guan5Shuming Luo6Flower Research Institute, Guangxi Academy of Agricultural SciencesFlower Research Institute, Guangxi Academy of Agricultural SciencesFlower Research Institute, Guangxi Academy of Agricultural SciencesAgricultural Science and Technology Information Research Institute, Guangxi Academy of Agricultural SciencesFlower Research Institute, Guangxi Academy of Agricultural SciencesFlower Research Institute, Guangxi Academy of Agricultural SciencesFlower Research Institute, Guangxi Academy of Agricultural SciencesThere are more than 2035 Begonia species (Begoniaceae) reported currently in the world. Begonia arachnoidea was found as a new species within a small area in Southern China. In this study, we are reporting for the first time its chloroplast genome for the purpose to compare with the chloroplast genomic data from other plant taxa which were closely related to this new species. Our results show that the circular chloroplast genome of B. arachnoidea is 169,725 bp in length, with 35.49% GC content. The whole structure of the genome has 76,431 bp in a large single-copy (LSC) region, 18,146 bp in a small single-copy (SSC) region, and the two inverted repeat (IRs) regions are both 37,574 bp. There are 90 protein-coding genes, 8 rRNA genes, and 42 tRNA genes encoded in this genome. Final phylogenetic analysis revealed that B. arachnoidea is genetically closest to B. pulchrifolia and B. coptidifolia.http://dx.doi.org/10.1080/23802359.2022.2087548begonia arachnoideachloroplastgenome assemblyhigh-throughput sequencing |
| spellingShingle | Da-Yan Tao Hai-Xia Yan Jin-Ye Zhou Jian-Bo Rong Qian Song Shi-Kai Guan Shuming Luo The complete chloroplast genome sequence of Begonia arachnoidea (Begoniaceae) Mitochondrial DNA. Part B. Resources begonia arachnoidea chloroplast genome assembly high-throughput sequencing |
| title | The complete chloroplast genome sequence of Begonia arachnoidea (Begoniaceae) |
| title_full | The complete chloroplast genome sequence of Begonia arachnoidea (Begoniaceae) |
| title_fullStr | The complete chloroplast genome sequence of Begonia arachnoidea (Begoniaceae) |
| title_full_unstemmed | The complete chloroplast genome sequence of Begonia arachnoidea (Begoniaceae) |
| title_short | The complete chloroplast genome sequence of Begonia arachnoidea (Begoniaceae) |
| title_sort | complete chloroplast genome sequence of begonia arachnoidea begoniaceae |
| topic | begonia arachnoidea chloroplast genome assembly high-throughput sequencing |
| url | http://dx.doi.org/10.1080/23802359.2022.2087548 |
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